Searched refs:star_allele (Results 1 – 10 of 10) sorted by relevance
| /dports/biology/bcftools/bcftools-1.14/ |
| H A D | abuf.c | 76 int star_allele; member
86 buf->star_allele = 1; in abuf_init()
258 if ( !buf->star_allele ) return 0; in _has_star_allele()
339 int star_allele = _has_star_allele(buf,iout); in _split_table_set_info() local
351 if ( star_allele ) in _split_table_set_info()
361 if ( star_allele ) kputs(",.",&dst); in _split_table_set_info()
385 if ( star_allele ) in _split_table_set_info()
395 if ( star_allele ) kputs(",.",&dst); in _split_table_set_info()
468 if ( ial==2 && !star_allele ) in _split_table_set_gt()
560 if ( star_allele ) in _split_table_set_format()
[all …]
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| /dports/biology/bio-mocha/bcftools-1.14/ |
| H A D | abuf.c | 76 int star_allele; member
86 buf->star_allele = 1; in abuf_init()
258 if ( !buf->star_allele ) return 0; in _has_star_allele()
339 int star_allele = _has_star_allele(buf,iout); in _split_table_set_info() local
351 if ( star_allele ) in _split_table_set_info()
361 if ( star_allele ) kputs(",.",&dst); in _split_table_set_info()
385 if ( star_allele ) in _split_table_set_info()
395 if ( star_allele ) kputs(",.",&dst); in _split_table_set_info()
468 if ( ial==2 && !star_allele ) in _split_table_set_gt()
560 if ( star_allele ) in _split_table_set_format()
[all …]
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| /dports/biology/py-pysam/pysam-0.18.0/bcftools/ |
| H A D | abuf.c | 76 int star_allele; member
86 buf->star_allele = 1; in abuf_init()
258 if ( !buf->star_allele ) return 0; in _has_star_allele()
339 int star_allele = _has_star_allele(buf,iout); in _split_table_set_info() local
351 if ( star_allele ) in _split_table_set_info()
361 if ( star_allele ) kputs(",.",&dst); in _split_table_set_info()
385 if ( star_allele ) in _split_table_set_info()
395 if ( star_allele ) kputs(",.",&dst); in _split_table_set_info()
468 if ( ial==2 && !star_allele ) in _split_table_set_gt()
560 if ( star_allele ) in _split_table_set_format()
[all …]
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| H A D | abuf.c.pysam.c | 78 int star_allele; member
88 buf->star_allele = 1; in abuf_init()
260 if ( !buf->star_allele ) return 0; in _has_star_allele()
341 int star_allele = _has_star_allele(buf,iout); in _split_table_set_info() local
353 if ( star_allele ) in _split_table_set_info()
363 if ( star_allele ) kputs(",.",&dst); in _split_table_set_info()
387 if ( star_allele ) in _split_table_set_info()
397 if ( star_allele ) kputs(",.",&dst); in _split_table_set_info()
470 if ( ial==2 && !star_allele ) in _split_table_set_gt()
562 if ( star_allele ) in _split_table_set_format()
[all …]
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| /dports/biology/bcftools/bcftools-1.14/plugins/ |
| H A D | indel-stats.c | 587 int star_allele = -1; in process_record() local
589 if ( !rec->d.allele[i][1] && rec->d.allele[i][0]=='*' ) { star_allele = i; break; } in process_record()
610 …if ( als_child[0]==star_allele || als_child[1]==star_allele ) continue; // don't count the sam… in process_record()
611 if ( als_father[0]==star_allele || als_father[1]==star_allele ) continue; in process_record()
612 if ( als_mother[0]==star_allele || als_mother[1]==star_allele ) continue; in process_record()
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| H A D | smpl-stats.c | 347 int star_allele = -1; in process_record() local
349 if ( !rec->d.allele[i][1] && rec->d.allele[i][0]=='*' ) { star_allele = i; break; } in process_record()
379 if ( als[j]==star_allele ) continue; in process_record()
392 if ( als[j]==0 || als[j]==star_allele ) continue; in process_record()
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| H A D | trio-stats.c | 539 int star_allele = -1; in process_record() local
541 if ( !rec->d.allele[i][1] && rec->d.allele[i][0]=='*' ) { star_allele = i; break; } in process_record()
566 if ( als[j]==star_allele ) { has_star_allele = 1; continue; } in process_record()
580 if ( als[j]==0 || als[j]==star_allele ) continue; in process_record()
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| /dports/biology/bio-mocha/bcftools-1.14/plugins/ |
| H A D | indel-stats.c | 587 int star_allele = -1; in process_record() local
589 if ( !rec->d.allele[i][1] && rec->d.allele[i][0]=='*' ) { star_allele = i; break; } in process_record()
610 …if ( als_child[0]==star_allele || als_child[1]==star_allele ) continue; // don't count the sam… in process_record()
611 if ( als_father[0]==star_allele || als_father[1]==star_allele ) continue; in process_record()
612 if ( als_mother[0]==star_allele || als_mother[1]==star_allele ) continue; in process_record()
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| H A D | smpl-stats.c | 347 int star_allele = -1; in process_record() local
349 if ( !rec->d.allele[i][1] && rec->d.allele[i][0]=='*' ) { star_allele = i; break; } in process_record()
379 if ( als[j]==star_allele ) continue; in process_record()
392 if ( als[j]==0 || als[j]==star_allele ) continue; in process_record()
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| H A D | trio-stats.c | 539 int star_allele = -1; in process_record() local
541 if ( !rec->d.allele[i][1] && rec->d.allele[i][0]=='*' ) { star_allele = i; break; } in process_record()
566 if ( als[j]==star_allele ) { has_star_allele = 1; continue; } in process_record()
580 if ( als[j]==0 || als[j]==star_allele ) continue; in process_record()
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