Searched refs:start_rowid (Results 1 – 6 of 6) sorted by relevance
| /dports/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/ |
| H A D | factory-reads.c | 46 int64_t start_rowid; member
223 if (cself->start_rowid == 0) { in CGReads15_Read()
224 ((CGReads15*)cself)->start_rowid = data->rowid; in CGReads15_Read()
291 if (cself->start_rowid == 0) { in CGReads25_Read()
292 ((CGReads15*)cself)->start_rowid = data->rowid; in CGReads25_Read()
354 *rowid = cself->start_rowid; in CGReads15_GetStartRow()
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| H A D | factory-tag-lfr.c | 46 int64_t start_rowid; member
224 *rowid = cself->start_rowid; in CGTagLfr15_GetStartRow()
233 if( cself->start_rowid == 0 ) { in CGTagLfr15_GetTagLfr()
234 ((CGTagLfr*)cself)->start_rowid = data->rowid; in CGTagLfr15_GetTagLfr()
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| /dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/ |
| H A D | reference.c | 134 int64_t start_rowid; member
386 node->start_rowid = start; in ReferenceList_MakeCursor()
425 assert( node->start_rowid == r_start ); in ReferenceList_MakeCursor()
855 *start = cself->start_rowid; in ReferenceObj_IdRange()
1000 int64_t rowid = cself->start_rowid + offset / cself->mgr->max_seq_len; in ReferenceObj_Read()
1376 … int64_t first_ref_row_of_window_abs = ( cself->start_rowid + first_ref_row_of_window_rel ); in ReferenceObj_MakePlacementIterator()
1386 o->rowcount_of_ref = ( cself->end_rowid - cself->start_rowid ) + 1; in ReferenceObj_MakePlacementIterator()
1822 … self->obj->start_rowid, self->cur_ref_row_rel, self->last_ref_row_of_window_rel ); in PlacementIteratorNextAvailPos()
1829 int64_t row = ( self->obj->start_rowid + self->cur_ref_row_rel ); in PlacementIteratorNextAvailPos()
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| H A D | writer-reference.c | 177 int64_t start_rowid; member
2205 obj->start_rowid = self->ref_rowid + 1; in ReferenceMgr_LoadSeq()
2267 if (obj->start_rowid == 0) { in ReferenceMgr_GetSeq()
2332 *row_id = seq->start_rowid; in ReferenceMgr_Get1stRow()
2801 *ref_id = cself->start_rowid + offset / cself->mgr->max_seq_len; in ReferenceSeq_TranslateOffset_int()
2807 *global_ref_start = (cself->start_rowid - 1) * cself->mgr->max_seq_len + offset; in ReferenceSeq_TranslateOffset_int()
3123 data->ref_1st_row_id = self->start_rowid; in ReferenceSeq_Compress()
3145 if(data->ref_1st_row_id != self->start_rowid || data->effective_offset != offset) { in ReferenceSeq_Compress()
3191 *row_id = cself->start_rowid; in ReferenceSeq_Get1stRow()
3214 rc = TableWriterRef_WriteCoverage(cself->mgr->writer, cself->start_rowid, offset, data); in ReferenceSeq_AddCoverage()
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| /dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/align/ |
| H A D | reference.c | 134 int64_t start_rowid; member
386 node->start_rowid = start; in ReferenceList_MakeCursor()
425 assert( node->start_rowid == r_start ); in ReferenceList_MakeCursor()
855 *start = cself->start_rowid; in ReferenceObj_IdRange()
1000 int64_t rowid = cself->start_rowid + offset / cself->mgr->max_seq_len; in ReferenceObj_Read()
1376 … int64_t first_ref_row_of_window_abs = ( cself->start_rowid + first_ref_row_of_window_rel ); in ReferenceObj_MakePlacementIterator()
1386 o->rowcount_of_ref = ( cself->end_rowid - cself->start_rowid ) + 1; in ReferenceObj_MakePlacementIterator()
1822 … self->obj->start_rowid, self->cur_ref_row_rel, self->last_ref_row_of_window_rel ); in PlacementIteratorNextAvailPos()
1829 int64_t row = ( self->obj->start_rowid + self->cur_ref_row_rel ); in PlacementIteratorNextAvailPos()
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| H A D | writer-reference.c | 177 int64_t start_rowid; member
2205 obj->start_rowid = self->ref_rowid + 1; in ReferenceMgr_LoadSeq()
2267 if (obj->start_rowid == 0) { in ReferenceMgr_GetSeq()
2332 *row_id = seq->start_rowid; in ReferenceMgr_Get1stRow()
2801 *ref_id = cself->start_rowid + offset / cself->mgr->max_seq_len; in ReferenceSeq_TranslateOffset_int()
2807 *global_ref_start = (cself->start_rowid - 1) * cself->mgr->max_seq_len + offset; in ReferenceSeq_TranslateOffset_int()
3123 data->ref_1st_row_id = self->start_rowid; in ReferenceSeq_Compress()
3145 if(data->ref_1st_row_id != self->start_rowid || data->effective_offset != offset) { in ReferenceSeq_Compress()
3191 *row_id = cself->start_rowid; in ReferenceSeq_Get1stRow()
3214 rc = TableWriterRef_WriteCoverage(cself->mgr->writer, cself->start_rowid, offset, data); in ReferenceSeq_AddCoverage()
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