| /dports/science/ghmm/ghmm-0.9-rc3/ghmm/ |
| H A D | sdviterbi.c | 225 int *state_seq = NULL; in ghmm_dsmodel_viterbi() local
254 ARRAY_CALLOC (state_seq, len_path); in ghmm_dsmodel_viterbi()
256 state_seq[i] = -1; in ghmm_dsmodel_viterbi()
382 state_seq[len_path - 1] = -1; in ghmm_dsmodel_viterbi()
386 state_seq[len_path - 1] = j; in ghmm_dsmodel_viterbi()
393 state_seq[t] = -1; in ghmm_dsmodel_viterbi()
407 state_seq[i--] = St; in ghmm_dsmodel_viterbi()
410 state_seq[i--] = St; in ghmm_dsmodel_viterbi()
422 tmp_path = state_seq; in ghmm_dsmodel_viterbi()
440 return (state_seq); in ghmm_dsmodel_viterbi()
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| H A D | sviterbi.c | 132 int *state_seq = NULL; in ghmm_cmodel_viterbi() local
145 ARRAY_CALLOC (state_seq, T); in ghmm_cmodel_viterbi()
205 state_seq[T - 1] = -1; in ghmm_cmodel_viterbi()
209 state_seq[T - 1] = j; in ghmm_cmodel_viterbi()
226 state_seq[t] = v->psi[t + 1][state_seq[t + 1]]; in ghmm_cmodel_viterbi()
229 return (state_seq); in ghmm_cmodel_viterbi()
234 m_free (state_seq); in ghmm_cmodel_viterbi()
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| H A D | viterbi.c | 207 int *state_seq = NULL; in ghmm_dmodel_viterbi() local
312 ARRAY_CALLOC(state_seq, len_path+1); in ghmm_dmodel_viterbi()
315 state_seq[len_path] = -1; in ghmm_dmodel_viterbi()
316 state_seq[state_seq_index--] = end_state; in ghmm_dmodel_viterbi()
322 state_seq[state_seq_index] = prev_state = next_state; in ghmm_dmodel_viterbi()
333 return state_seq; in ghmm_dmodel_viterbi()
339 m_free(state_seq); in ghmm_dmodel_viterbi()
345 double ghmm_dmodel_viterbi_logp(ghmm_dmodel * mo, int *o, int len, int *state_seq) in ghmm_dmodel_viterbi_logp() argument
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| H A D | viterbi.h | 75 double ghmm_dmodel_viterbi_logp (ghmm_dmodel * mo, int *o, int len, int *state_seq);
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| H A D | pviterbi.h | 75 int *state_seq, int state_seq_len);
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| H A D | pviterbi.c | 537 int *state_seq = NULL; in ghmm_dpmodel_viterbi_variable_tb() local
729 state_seq = ighmm_list_to_array(state_list); in ghmm_dpmodel_viterbi_variable_tb()
738 return (state_seq); in ghmm_dpmodel_viterbi_variable_tb()
743 m_free(state_seq); in ghmm_dpmodel_viterbi_variable_tb()
752 int *state_seq, int state_seq_len) { in ghmm_dpmodel_viterbi_logp() argument
766 i = state_seq[t]; in ghmm_dpmodel_viterbi_logp()
800 i = state_seq[t]; /* current state */ in ghmm_dpmodel_viterbi_logp()
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| /dports/science/ghmm/ghmm-0.9-rc3/tests/ |
| H A D | shmm_viterbi_test.c | 32 int smo_number, sqd_number, *state_seq = NULL, model, t, cnt = 0; in viterbi_test() local
53 state_seq = ghmm_cmodel_viterbi(smo[model], sqd[i]->seq[j], sqd[i]->seq_len[j], in viterbi_test()
55 if (state_seq == NULL) {GHMM_LOG_QUEUED(LCONVERTED); goto STOP;} in viterbi_test()
59 fprintf(outfile, "%2d ", state_seq[t]); in viterbi_test()
61 m_free(state_seq); in viterbi_test()
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| /dports/biology/py-biopython/biopython-1.79/Tests/ |
| H A D | test_HMMGeneral.py | 37 state_seq = ()
38 training_seq = Trainer.TrainingSequence(emission_seq, state_seq)
40 self.assertEqual(training_seq.states, state_seq)
44 state_seq = ("1", "2")
45 training_seq = Trainer.TrainingSequence(emission_seq, state_seq)
47 self.assertEqual(training_seq.states, state_seq)
51 state_seq = ("1",)
53 Trainer.TrainingSequence(emission_seq, state_seq)
368 state_seq = ()
369 training_seq = Trainer.TrainingSequence(emission_seq, state_seq)
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| H A D | test_HMMCasino.py | 54 state_seq = []
58 state_seq.append(cur_state)
75 return roll_seq, state_seq
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| /dports/biology/py-biopython/biopython-1.79/Bio/HMM/ |
| H A D | Trainer.py | 410 def _count_transitions(self, state_seq, transition_counts): argument
419 for cur_pos in range(len(state_seq) - 1):
420 cur_state = state_seq[cur_pos]
421 next_state = state_seq[cur_pos + 1]
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| /dports/science/ghmm/ghmm-0.9-rc3/ghmmwrapper/ |
| H A D | wrapper_dpmodel.i | 184 int *state_seq, int state_seq_len);
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| H A D | wrapper_dmodel.i | 264 double viterbi_logp(int *o, int len, int *state_seq);
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| /dports/science/pybrain/pybrain-0.3.3/pybrain/rl/learners/valuebased/ |
| H A D | linearfa.py | 328 state_seq = [choice(r_states) for _ in range(num_interactions)]
330 … rewards = [ones(num_interactions), rand(num_interactions), action_seq, [s[0] for s in state_seq]]
331 datas = [list(zip(state_seq, action_seq, r)) for r in rewards]
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| /dports/www/qt5-webengine/qtwebengine-everywhere-src-5.15.2/src/3rdparty/chromium/third_party/blink/renderer/modules/presentation/ |
| H A D | presentation_availability_state_test.cc | 288 Vector<ScreenAvailability> state_seq = {ScreenAvailability::UNAVAILABLE, in TEST_F() local
291 TestRequestAvailability({url1_, url2_, url3_}, state_seq, mock_callback_1); in TEST_F()
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| /dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/blink/renderer/modules/presentation/ |
| H A D | presentation_availability_state_test.cc | 286 Vector<ScreenAvailability> state_seq = {ScreenAvailability::UNAVAILABLE, in TEST_F() local
289 TestRequestAvailability({url1_, url2_, url3_}, state_seq, mock_callback_1); in TEST_F()
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