stkfile (reference) in projects: dports

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Searched refs:stkfile (Results 1 – 10 of 10) sorted by relevance

/dports/biology/infernal/infernal-1.1.3/easel/
H A D	esl_msafile_afa.c	434 read_test_msas_digital(char afafile, char stkfile) in read_test_msas_digital() argument 447 …if ( esl_msafile_Open(&abc, stkfile, NULL, eslMSAFILE_STOCKHOLM, NULL, &afp2) != eslOK) esl_fatal… in read_test_msas_digital() 484 read_test_msas_text(char afafile, char stkfile) in read_test_msas_text() argument 496 …if ( esl_msafile_Open(NULL, stkfile, NULL, eslMSAFILE_STOCKHOLM, NULL, &afp2) != eslOK) esl_fatal… in read_test_msas_text() 563 char stkfile[32] = "esltmpstkXXXXXX"; in main() local 575 if ( esl_tmpfile_named(stkfile, &stkfp) != eslOK) esl_fatal(msg); in main() 580 read_test_msas_digital(afafile, stkfile); in main() 581 read_test_msas_text (afafile, stkfile); in main() 597 remove(stkfile); in main()
H A D	esl_msafile_psiblast.c	522 read_test_msas_digital(char pbfile, char stkfile) in read_test_msas_digital() argument 535 …if ( esl_msafile_Open(&abc, stkfile, NULL, eslMSAFILE_STOCKHOLM, NULL, &afp2) != eslOK) esl_fatal… in read_test_msas_digital() 572 read_test_msas_text(char pbfile, char stkfile) in read_test_msas_text() argument 584 …if ( esl_msafile_Open(NULL, stkfile, NULL, eslMSAFILE_STOCKHOLM, NULL, &afp2) != eslOK) esl_fat… in read_test_msas_text() 651 char stkfile[32] = "esltmpstkXXXXXX"; in main() local 662 if ( esl_tmpfile_named(stkfile, &stkfp) != eslOK) esl_fatal(msg); in main() 667 read_test_msas_digital(pbfile, stkfile); in main() 668 read_test_msas_text (pbfile, stkfile); in main() 685 remove(stkfile); in main()
H A D	esl_msafile_clustal.c	767 read_test_msas_digital(char alnfile, char stkfile) in read_test_msas_digital() argument 780 …if ( esl_msafile_Open(&abc, stkfile, NULL, eslMSAFILE_STOCKHOLM, NULL, &afp2) != eslOK) esl_fat… in read_test_msas_digital() 817 read_test_msas_text(char alnfile, char stkfile) in read_test_msas_text() argument 829 …if ( esl_msafile_Open(NULL, stkfile, NULL, eslMSAFILE_STOCKHOLM, NULL, &afp2) != eslOK) esl_fat… in read_test_msas_text() 896 char stkfile[32] = "esltmpstkXXXXXX"; in main() local 908 if ( esl_tmpfile_named(stkfile, &stkfp) != eslOK) esl_fatal(msg); in main() 913 read_test_msas_digital(alnfile, stkfile); in main() 914 read_test_msas_text (alnfile, stkfile); in main() 932 remove(stkfile); in main()
H A D	esl_msafile_a2m.c	778 read_test_msas_digital(char a2mfile, char stkfile) in read_test_msas_digital() argument 791 …if ( esl_msafile_Open(&abc, stkfile, NULL, eslMSAFILE_STOCKHOLM, NULL, &afp2) != eslOK) esl_fatal… in read_test_msas_digital() 828 read_test_msas_text(char a2mfile, char stkfile) in read_test_msas_text() argument 840 …if ( esl_msafile_Open(NULL, stkfile, NULL, eslMSAFILE_STOCKHOLM, NULL, &afp2) != eslOK) esl_fatal… in read_test_msas_text() 945 char stkfile[32] = "esltmpstkXXXXXX"; in main() local 959 if ( esl_tmpfile_named(stkfile, &stkfp) != eslOK) esl_fatal(msg); in main() 964 read_test_msas_digital(a2mfile, stkfile); in main() 965 read_test_msas_text (a2mfile, stkfile); in main() 986 remove(stkfile); in main()
H A D	esl_msafile_selex.c	949 read_test_msas_digital(char slxfile, char stkfile) in read_test_msas_digital() argument 962 …if ( esl_msafile_Open(&abc, stkfile, NULL, eslMSAFILE_STOCKHOLM, NULL, &afp2) != eslOK) esl_fat… in read_test_msas_digital() 999 read_test_msas_text(char slxfile, char stkfile) in read_test_msas_text() argument 1011 …if ( esl_msafile_Open(NULL, stkfile, NULL, eslMSAFILE_STOCKHOLM, NULL, &afp2) != eslOK) esl_fat… in read_test_msas_text() 1078 char stkfile[32] = "esltmpstkXXXXXX"; in main() local 1089 if ( esl_tmpfile_named(stkfile, &stkfp) != eslOK) esl_fatal(msg); in main() 1094 read_test_msas_digital(slxfile, stkfile); in main() 1095 read_test_msas_text (slxfile, stkfile); in main() 1115 remove(stkfile); in main()
/dports/biology/hmmer/hmmer-3.3/easel/
H A D	esl_msafile_afa.c	434 read_test_msas_digital(char afafile, char stkfile) in read_test_msas_digital() argument 447 …if ( esl_msafile_Open(&abc, stkfile, NULL, eslMSAFILE_STOCKHOLM, NULL, &afp2) != eslOK) esl_fatal… in read_test_msas_digital() 484 read_test_msas_text(char afafile, char stkfile) in read_test_msas_text() argument 496 …if ( esl_msafile_Open(NULL, stkfile, NULL, eslMSAFILE_STOCKHOLM, NULL, &afp2) != eslOK) esl_fatal… in read_test_msas_text() 563 char stkfile[32] = "esltmpstkXXXXXX"; in main() local 575 if ( esl_tmpfile_named(stkfile, &stkfp) != eslOK) esl_fatal(msg); in main() 580 read_test_msas_digital(afafile, stkfile); in main() 581 read_test_msas_text (afafile, stkfile); in main() 597 remove(stkfile); in main()
H A D	esl_msafile_psiblast.c	522 read_test_msas_digital(char pbfile, char stkfile) in read_test_msas_digital() argument 535 …if ( esl_msafile_Open(&abc, stkfile, NULL, eslMSAFILE_STOCKHOLM, NULL, &afp2) != eslOK) esl_fatal… in read_test_msas_digital() 572 read_test_msas_text(char pbfile, char stkfile) in read_test_msas_text() argument 584 …if ( esl_msafile_Open(NULL, stkfile, NULL, eslMSAFILE_STOCKHOLM, NULL, &afp2) != eslOK) esl_fat… in read_test_msas_text() 651 char stkfile[32] = "esltmpstkXXXXXX"; in main() local 662 if ( esl_tmpfile_named(stkfile, &stkfp) != eslOK) esl_fatal(msg); in main() 667 read_test_msas_digital(pbfile, stkfile); in main() 668 read_test_msas_text (pbfile, stkfile); in main() 685 remove(stkfile); in main()
H A D	esl_msafile_clustal.c	767 read_test_msas_digital(char alnfile, char stkfile) in read_test_msas_digital() argument 780 …if ( esl_msafile_Open(&abc, stkfile, NULL, eslMSAFILE_STOCKHOLM, NULL, &afp2) != eslOK) esl_fat… in read_test_msas_digital() 817 read_test_msas_text(char alnfile, char stkfile) in read_test_msas_text() argument 829 …if ( esl_msafile_Open(NULL, stkfile, NULL, eslMSAFILE_STOCKHOLM, NULL, &afp2) != eslOK) esl_fat… in read_test_msas_text() 896 char stkfile[32] = "esltmpstkXXXXXX"; in main() local 908 if ( esl_tmpfile_named(stkfile, &stkfp) != eslOK) esl_fatal(msg); in main() 913 read_test_msas_digital(alnfile, stkfile); in main() 914 read_test_msas_text (alnfile, stkfile); in main() 932 remove(stkfile); in main()
H A D	esl_msafile_a2m.c	778 read_test_msas_digital(char a2mfile, char stkfile) in read_test_msas_digital() argument 791 …if ( esl_msafile_Open(&abc, stkfile, NULL, eslMSAFILE_STOCKHOLM, NULL, &afp2) != eslOK) esl_fatal… in read_test_msas_digital() 828 read_test_msas_text(char a2mfile, char stkfile) in read_test_msas_text() argument 840 …if ( esl_msafile_Open(NULL, stkfile, NULL, eslMSAFILE_STOCKHOLM, NULL, &afp2) != eslOK) esl_fatal… in read_test_msas_text() 945 char stkfile[32] = "esltmpstkXXXXXX"; in main() local 959 if ( esl_tmpfile_named(stkfile, &stkfp) != eslOK) esl_fatal(msg); in main() 964 read_test_msas_digital(a2mfile, stkfile); in main() 965 read_test_msas_text (a2mfile, stkfile); in main() 986 remove(stkfile); in main()
H A D	esl_msafile_selex.c	949 read_test_msas_digital(char slxfile, char stkfile) in read_test_msas_digital() argument 962 …if ( esl_msafile_Open(&abc, stkfile, NULL, eslMSAFILE_STOCKHOLM, NULL, &afp2) != eslOK) esl_fat… in read_test_msas_digital() 999 read_test_msas_text(char slxfile, char stkfile) in read_test_msas_text() argument 1011 …if ( esl_msafile_Open(NULL, stkfile, NULL, eslMSAFILE_STOCKHOLM, NULL, &afp2) != eslOK) esl_fat… in read_test_msas_text() 1078 char stkfile[32] = "esltmpstkXXXXXX"; in main() local 1089 if ( esl_tmpfile_named(stkfile, &stkfp) != eslOK) esl_fatal(msg); in main() 1094 read_test_msas_digital(slxfile, stkfile); in main() 1095 read_test_msas_text (slxfile, stkfile); in main() 1115 remove(stkfile); in main()