Searched refs:strandChar (Results 1 – 8 of 8) sorted by relevance
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/readers/ |
| H A D | bed_autosql_standard.cpp | 142 auto strandChar = strandStr[0]; in SetLocation() local
143 if (string("+-.").find(strandChar) == string::npos) { in SetLocation()
146 else if (strandChar == '-') { in SetLocation()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/readers/ |
| H A D | bed_autosql_standard.cpp | 142 auto strandChar = strandStr[0]; in SetLocation() local
143 if (string("+-.").find(strandChar) == string::npos) { in SetLocation()
146 else if (strandChar == '-') { in SetLocation()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/utils/fileType/ |
| H A D | FileRecordTypeChecker.cpp | 478 const string &strandChar = _tokenizer.getElem(field); in isStrandField() local
479 return (strandChar == "+" || strandChar == "-" || strandChar == "." || strandChar == "*"); in isStrandField()
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| /dports/biology/py-deeptoolsintervals/deeptoolsintervals-0.1.9/deeptoolsintervals/tree/ |
| H A D | tree.c | 238 char *chrom = NULL, *name = NULL, *transcript_id = NULL, strandChar; in pyFindOverlaps() local
281 strandChar = '.'; in pyFindOverlaps()
283 strandChar = '+'; in pyFindOverlaps()
285 strandChar = '-'; in pyFindOverlaps()
294 otuple = Py_BuildValue("(kkskcO)", lstart, lend, name, llabelIdx, strandChar, oscore); in pyFindOverlaps()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/utils/FileRecordTools/Records/ |
| H A D | BamRecord.cpp | 61 char strandChar = bamFileReader->getStrand(); in initFromFile() local
62 setStrand(strandChar); in initFromFile()
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| /dports/biology/star/STAR-2.7.9a/source/ |
| H A D | GTF_transcriptGeneSJ.cpp | 142 char strandChar[3]={'.','+','-'}; in transcriptGeneSJ() local
153 sjdbLoci.str.push_back(strandChar[sjLoci[ii*sjStride+2]]); in transcriptGeneSJ()
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| H A D | sjdbPrepare.cpp | 198 char strandChar[3]={'.','+','-'}; in sjdbPrepare() local
219 << "\t"<< strandChar[mapGen.sjdbStrand[ii]]<<"\n"; in sjdbPrepare()
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| /dports/biology/bbmap/bbmap/current/stream/ |
| H A D | Read.java | 3001 public char strandChar(){return Shared.strandCodes2[strand()];} in strandChar() method in Read
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