Searched refs:strand_specific (Results 1 – 8 of 8) sorted by relevance
| /dports/biology/kallisto/kallisto-0.46.1/src/ |
| H A D | weights.cpp | 135 if (opt.strand_specific) { in update_eff_lens()
141 if (!opt.strand_specific || (opt.strand == ProgramOptions::StrandType::FR)) { in update_eff_lens()
150 if (!opt.strand_specific || (opt.strand == ProgramOptions::StrandType::RF)) { in update_eff_lens()
176 if (!opt.strand_specific || (opt.strand == ProgramOptions::StrandType::FR)) { in update_eff_lens()
186 if (!opt.strand_specific || (opt.strand == ProgramOptions::StrandType::RF)) { in update_eff_lens()
198 if (!opt.strand_specific) { in update_eff_lens()
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| H A D | common.h | 80 bool strand_specific; member
117 strand_specific(false), in ProgramOptions()
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| H A D | main.cpp | 277 opt.strand_specific = true; in ParseOptionsEM()
282 opt.strand_specific = true; in ParseOptionsEM()
477 opt.strand_specific = true; in ParseOptionsPseudo()
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| H A D | ProcessReads.cpp | 1071 if (mp.opt.strand_specific && !u.empty()) { in processBuffer()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/magicblast/ |
| H A D | magicblast_util.cpp | 917 E_StrandSpecificity strand_specific, in PrintSAM() argument
949 trim_read_ids, strand_specific, only_specific, in PrintSAM()
956 trim_read_ids, strand_specific, only_specific, in PrintSAM()
1059 if (strand_specific != eNonSpecific) { in PrintSAM()
1066 if (((strand_specific == eFwdRev && plus_minus != other) in PrintSAM()
1067 || (strand_specific == eRevFwd && minus_plus != other)) in PrintSAM()
1500 if (strand_specific == eFwdRev) { in PrintSAM()
1503 else if (strand_specific == eRevFwd) { in PrintSAM()
1514 strand_specific, only_specific, print_md_tag); in PrintSAM()
1554 E_StrandSpecificity strand_specific, in PrintSAM() argument
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| H A D | magicblast_util.hpp | 63 E_StrandSpecificity strand_specific,
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| /dports/biology/velvet/velvet_1.2.10/ |
| H A D | ChangeLog | 356 - Bug strand_specific option
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| /dports/biology/velvet/velvet_1.2.10/doc/manual_src/ |
| H A D | Manual.tex | 255 > ./velveth output_directory/ 21 (...data files...) -strand_specific
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