Searched refs:subOrRoot (Results 1 – 5 of 5) sorted by relevance
124 applyDLPrefixes(subOrRoot); in processParse()142 processMultipliers(subOrRoot); in processParse()183 processFusedRingBridges(subOrRoot); in processParse()184 assignElementSymbolLocants(subOrRoot); in processParse()185 processRingAssemblies(subOrRoot); in processParse()190 applyLambdaConvention(subOrRoot); in processParse()191 handleMultiRadicals(subOrRoot); in processParse()207 …suffixApplier.resolveSuffixes(subOrRoot.getFirstChildElement(GROUP_EL), subOrRoot.getChildElements… in processParse()4086 subOrRoot.detach(); in addImplicitBracketsToAminoAcids()4087 bracket.addChild(subOrRoot); in addImplicitBracketsToAminoAcids()[all …]
110 resolveAmbiguities(subOrRoot); in processParse()112 processLocants(subOrRoot); in processParse()113 convertOrthoMetaParaToLocants(subOrRoot); in processParse()114 formAlkaneStemsFromComponents(subOrRoot); in processParse()117 processIndicatedHydrogens(subOrRoot); in processParse()118 processStereochemistry(subOrRoot); in processParse()119 processInfixes(subOrRoot); in processParse()120 processSuffixPrefixes(subOrRoot); in processParse()121 processLambdaConvention(subOrRoot); in processParse()131 processHydroCarbonRings(subOrRoot); in processParse()[all …]
140 boolean foundSomethingToSubstitute = potentiallyCanSubstitute(subOrRoot); in resolveRootOrSubstituentLocanted()144 performLocantedSubstitutiveOperations(state, subOrRoot);//e.g. 2-methyltoluene in resolveRootOrSubstituentLocanted()150 boolean foundSomethingToSubstitute = potentiallyCanSubstitute(subOrRoot); in resolveRootOrSubstituentUnLocanted()155 performUnLocantedSubstitutiveOperations(state, subOrRoot);//e.g. tetramethylfuran in resolveRootOrSubstituentUnLocanted()465 List<Element> groups = subOrRoot.getChildElements(GROUP_EL); in resolveLocantedFeatures()478 List<Element> children =subOrRoot.getChildElements(); in resolveLocantedFeatures()806 List<Element> groups = subOrRoot.getChildElements(GROUP_EL); in resolveUnLocantedFeatures()817 List<Element> children = subOrRoot.getChildElements(); in resolveUnLocantedFeatures()2427 private static Element findRightMostGroupInSubOrRoot(Element subOrRoot) { in findRightMostGroupInSubOrRoot() argument2428 for (int i = subOrRoot.getChildCount() - 1; i >= 0; i--) { in findRightMostGroupInSubOrRoot()[all …]
44 …static void processFusedRings(BuildState state, Element subOrRoot) throws StructureBuildingExcept… in processFusedRings() argument45 List<Element> groups = subOrRoot.getChildElements(GROUP_EL); in processFusedRings()
1096 private void processStereochemistry(Element subOrRoot) throws ComponentGenerationException { in processStereochemistry() argument1097 new ComponentGenerator(new NameToStructureConfig()).processStereochemistry(subOrRoot); in processStereochemistry()