/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/flatfile/ |
H A D | ind.cpp | 126 DataBlkPtr subdbp; in ind_subdbp() local 146 for(subdbp = (DataBlkPtr) dbp->data; subdbp != NULL; subdbp = subdbp->next) in ind_subdbp() 148 if(ind[subdbp->type] != NULL) in ind_subdbp() 158 ind[subdbp->type] = subdbp; in ind_subdbp() 160 i = StringLen(ref_tag[subdbp->type]); in ind_subdbp() 161 subdbp->offset[subdbp->len-1] = '\0'; in ind_subdbp() 164 subdbp->offset += i; in ind_subdbp() 165 subdbp->len -= (i + 1); in ind_subdbp() 167 for(s = subdbp->offset; *s != '\0'; s++) in ind_subdbp() 186 subdbp->len -= (ss - s - 1); in ind_subdbp() [all …]
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H A D | pir_ascii.cpp | 2185 DataBlkPtr subdbp; in pir_feat() local 2206 for(subdbp = (DataBlkPtr) dbp->data; subdbp != NULL; subdbp = subdbp->next) in pir_feat() 2208 str = StringSave(std::string(subdbp->offset, subdbp->offset + subdbp->len).c_str()); in pir_feat() 2543 DataBlkPtr subdbp; in featdbp() local 2556 subdbp = PirDataBlkNew(); in featdbp() 2557 subdbp->offset = bptr; in featdbp() 2593 DataBlkPtr subdbp; in subdbp_func() local 2616 subdbp->type = 0; in subdbp_func() 2621 subdbp->offset = str; in subdbp_func() 2634 subdbp->len = s0 - subdbp->offset; in subdbp_func() [all …]
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H A D | sp_ascii.cpp | 783 DataBlkPtr subdbp; in GetSPGenome() local 791 for(; subdbp != NULL; subdbp = subdbp->next) in GetSPGenome() 1522 DataBlkPtr subdbp; in GetTaxIdFrom_OX() local 1535 subdbp = (DataBlkPtr) dbp->data; in GetTaxIdFrom_OX() 1536 for(; subdbp != NULL; subdbp = subdbp->next) in GetTaxIdFrom_OX() 1541 ch = subdbp->offset[subdbp->len-1]; in GetTaxIdFrom_OX() 1542 subdbp->offset[subdbp->len-1] = '\0'; in GetTaxIdFrom_OX() 1544 subdbp->offset[subdbp->len-1] = ch; in GetTaxIdFrom_OX() 1653 DataBlkPtr subdbp; in get_plasmid() local 1666 subdbp = (DataBlkPtr) dbp->data; in get_plasmid() [all …]
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H A D | em_ascii.cpp | 2316 DataBlkPtr subdbp; in FakeEmblBioSources() local 2358 subdbp = (DataBlkPtr) dbp->data; in FakeEmblBioSources() 2359 for(; subdbp != NULL; subdbp = subdbp->next) in FakeEmblBioSources() 2361 if(subdbp->type == ParFlat_OG) in FakeEmblBioSources() 2363 GetGenomeInfo(*bio_src, subdbp->offset + ParFlat_COL_DATA_EMBL); in FakeEmblBioSources() 2366 if(subdbp->type != ParFlat_OC || subdbp->offset == NULL || in FakeEmblBioSources() 2367 subdbp->len < ParFlat_COL_DATA_EMBL) in FakeEmblBioSources() 2370 ch = subdbp->offset[subdbp->len]; in FakeEmblBioSources() 2371 subdbp->offset[subdbp->len] = '\0'; in FakeEmblBioSources() 2372 q = StringSave(subdbp->offset + ParFlat_COL_DATA_EMBL); in FakeEmblBioSources() [all …]
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H A D | sp_ref.cpp | 491 DataBlkPtr subdbp; in SprotRefString() local 510 for(subdbp = (DataBlkPtr) dbp->data; subdbp != NULL; subdbp = subdbp->next) in SprotRefString() 514 bptr = subdbp->offset; in SprotRefString() 515 eptr = bptr + subdbp->len; in SprotRefString() 524 switch(subdbp->type) in SprotRefString()
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H A D | loadfeat.cpp | 1225 DataBlkPtr subdbp; in SeqFeatPub() local 1295 subdbp = (DataBlkPtr) dbp->data; in SeqFeatPub() 1296 for(; subdbp != NULL; subdbp = subdbp->next) in SeqFeatPub() 1298 if(subdbp->type != ParFlat_RP) in SeqFeatPub() 1301 for(p = subdbp->offset; *p != '\0' && IS_DIGIT(*p) == 0;) in SeqFeatPub()
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/dports/databases/db18/db-18.1.40/src/db/ |
H A D | db.c | 78 __db_master_open(subdbp, ip, txn, name, flags, mode, dbpp) in __db_master_open() argument 79 DB *subdbp; in __db_master_open() 93 if ((ret = __db_create_internal(&dbp, subdbp->env, 0)) != 0) 97 dbp->dirname = subdbp->dirname; 105 dbp->pgsize = subdbp->pgsize; 107 F_SET(dbp, F_ISSET(subdbp, 119 if (LF_ISSET(DB_CREATE) && subdbp->blob_threshold != 0) { 144 F_SET(subdbp, DB_AM_CHKSUM); 150 subdbp->pgsize = dbp->pgsize;
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/dports/databases/db5/db-5.3.28/build_vxworks/util/ |
H A D | db_load.c | 803 db_load_configure(dbenv, dbp, clp, subdbp, keysp) in db_load_configure() argument 806 char **clp, **subdbp; 827 if (*subdbp != NULL) 828 free(*subdbp); 829 if ((*subdbp = strdup(value)) == NULL) { 888 db_load_rheader(dbenv, dbp, dbtypep, subdbp, checkprintp, keysp, part_keyp) in db_load_rheader() argument 892 char **subdbp; 991 if ((ret = db_load_convprintable(dbenv, value, subdbp)) != 0) {
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/dports/databases/db5/db-5.3.28/src/db/ |
H A D | db.c | 77 __db_master_open(subdbp, ip, txn, name, flags, mode, dbpp) in __db_master_open() argument 78 DB *subdbp; in __db_master_open() 92 if ((ret = __db_create_internal(&dbp, subdbp->env, 0)) != 0) 96 dbp->dirname = subdbp->dirname; 104 dbp->pgsize = subdbp->pgsize; 106 F_SET(dbp, F_ISSET(subdbp, 129 F_SET(subdbp, DB_AM_CHKSUM); 135 subdbp->pgsize = dbp->pgsize;
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/dports/databases/db5/db-5.3.28/util/ |
H A D | db_load.c | 788 configure(dbenv, dbp, clp, subdbp, keysp) in configure() argument 791 char **clp, **subdbp; 812 if (*subdbp != NULL) 813 free(*subdbp); 814 if ((*subdbp = strdup(value)) == NULL) { 873 rheader(dbenv, dbp, dbtypep, subdbp, checkprintp, keysp, part_keyp) in rheader() argument 877 char **subdbp; 976 if ((ret = convprintable(dbenv, value, subdbp)) != 0) {
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/dports/databases/db18/db-18.1.40/util/ |
H A D | db_load.c | 886 configure(dbenv, dbp, clp, subdbp, keysp) in configure() argument 889 char **clp, **subdbp; 910 if (*subdbp != NULL) 911 free(*subdbp); 912 if ((*subdbp = strdup(value)) == NULL) { 971 rheader(dbenv, dbp, dbtypep, subdbp, checkprintp, keysp, part_keyp) in rheader() argument 975 char **subdbp; 1074 if ((ret = convprintable(dbenv, value, subdbp)) != 0) {
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/dports/databases/db18/db-18.1.40/build_vxworks/util/ |
H A D | db_load.c | 901 db_load_configure(dbenv, dbp, clp, subdbp, keysp) in db_load_configure() argument 904 char **clp, **subdbp; 925 if (*subdbp != NULL) 926 free(*subdbp); 927 if ((*subdbp = strdup(value)) == NULL) { 986 db_load_rheader(dbenv, dbp, dbtypep, subdbp, checkprintp, keysp, part_keyp) in db_load_rheader() argument 990 char **subdbp; 1089 if ((ret = db_load_convprintable(dbenv, value, subdbp)) != 0) {
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/dports/textproc/htdig/htdig-3.2.0b6/htdb/ |
H A D | htdb_load.cc | 508 configure(DB *dbp, char **clp, char **subdbp, int *keysp) in configure() argument 524 if ((*subdbp = strdup(value)) == NULL) { in configure() 572 rheader(DB *dbp, DBTYPE *dbtypep, char **subdbp, int *checkprintp, int *keysp) in rheader() argument 649 if ((*subdbp = strdup(value)) == NULL) { in rheader()
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/dports/textproc/mifluz/mifluz-0.26.0/htdb/ |
H A D | htdb_load.cc | 682 configure(DB *dbp, char **clp, char **subdbp, int *keysp) in configure() argument 699 if ((*subdbp = strdup(value)) == NULL) { in configure() 748 rheader(DB *dbp, DBTYPE *dbtypep, char **subdbp, int *checkprintp, int *keysp) in rheader() argument 826 if ((*subdbp = strdup(value)) == NULL) { in rheader()
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/dports/textproc/mifluz/mifluz-0.26.0/db/ |
H A D | db.c | 401 CDB___db_master_open(subdbp, name, flags, mode, dbpp) in CDB___db_master_open() argument 402 DB *subdbp; in CDB___db_master_open() 412 if ((ret = CDB_db_create(&dbp, subdbp->dbenv, 0)) != 0) 422 dbp->open_txn = subdbp->open_txn; 423 dbp->pgsize = subdbp->pgsize;
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