Searched refs:subj_range (Results 1 – 4 of 4) sorted by relevance
672 TSeqRange subj_range((*aln)->GetSeqRange(kSubjRow)); in s_ExtractSeqidsAndRanges() local675 TSeqRange r(subj_range); in s_ExtractSeqidsAndRanges()678 subj_range.SetFrom(r.GetToOpen()); in s_ExtractSeqidsAndRanges()679 subj_range.SetToOpen(r.GetFrom()); in s_ExtractSeqidsAndRanges()681 id_ranges[subj].push_back(subj_range); in s_ExtractSeqidsAndRanges()
688 TSeqRange subj_range((*aln)->GetSeqRange(kSubjRow)); in s_ExtractSeqidsAndRanges() local691 TSeqRange r(subj_range); in s_ExtractSeqidsAndRanges()694 subj_range.SetFrom(r.GetToOpen()); in s_ExtractSeqidsAndRanges()695 subj_range.SetToOpen(r.GetFrom()); in s_ExtractSeqidsAndRanges()697 id_ranges[subj].push_back(subj_range); in s_ExtractSeqidsAndRanges()
1822 TSeqRange subj_range; in ExtractAlgorithmOptions() local1833 subj_range, parse_deflines, in ExtractAlgorithmOptions()2431 TSeqRange subj_range; in ExtractAlgorithmOptions() local2433 subj_range = in ExtractAlgorithmOptions()2446 subj_range, parse_deflines, in ExtractAlgorithmOptions()