| /dports/lang/maude/maude-2.7.1/src/CUI_Theory/ |
| H A D | CUI_Matcher.cc | 128 CUI_LhsAutomaton::freeMatch(DagNode* subject0, in freeMatch() argument
135 if (subpattern0.match(subject0, solution, sp0)) in freeMatch()
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| H A D | CUI_LhsAutomaton.hh | 101 bool freeMatch(DagNode* subject0,
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| /dports/biology/ncbi-toolkit/ncbi/tools/ |
| H A D | blast.c | 7088 Uint1Ptr subject0; in BlastWordFinder_contig() local
7163 s_off = s-subject0; in BlastWordFinder_contig()
7226 s_off = s-subject0; in BlastWordFinder_contig()
7375 Uint1Ptr subject0; in BlastWordFinder_mh_contig() local
8833 Uint1Ptr subject0; in BlastNtWordFinder_mh() local
8925 s_off = s-subject0+1; in BlastNtWordFinder_mh()
8995 s_off = s-subject0+1; in BlastNtWordFinder_mh()
9153 s_off = s-subject0+1; in BlastNtWordFinder()
9303 s_off = s-subject0+1; in BlastNtWordFinder()
9456 s_off = s-subject0+1; in BlastNtWordFinder()
[all …]
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| H A D | mblast.c | 733 MegaBlastNtWordExtend (BlastSearchBlkPtr search, Uint1Ptr subject0,
2830 Uint1Ptr subject0 = NULL; in MegaBlastGappedAlign() local
2856 subject0 = search->subject->sequence; in MegaBlastGappedAlign()
2869 subject0 = in MegaBlastGappedAlign()
2889 gap_align->subject = subject0; in MegaBlastGappedAlign()
3097 MegaBlastNtWordExtend(BlastSearchBlkPtr search, Uint1Ptr subject0, in MegaBlastNtWordExtend() argument
3124 s = subject0 + s_off; in MegaBlastNtWordExtend()
3127 s = subject0 + s_off/4; in MegaBlastNtWordExtend()
3201 Uint1Ptr query0, subject0, query, subject; in PerformGreedyAlignmentWithTraceback() local
3210 subject0 = gap_align->subject; in PerformGreedyAlignmentWithTraceback()
[all …]
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| H A D | dotseq.c | 1043 Uint1Ptr s, subject0, s_end, q_end; in DOT_ComputeHits() local
1087 subject0 = subjectseq; in DOT_ComputeHits()
1137 s_pos = s_off = s-subject0+1; in DOT_ComputeHits()
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| /dports/biology/ncbi-toolkit/ncbi/algo/blast/core/ |
| H A D | na_ungapped.c | 157 Uint1 *subject0, *sf, *q_beg, *q_end, *s, *start; in s_NuclUngappedExtendExact() local
163 subject0 = subject->sequence; in s_NuclUngappedExtendExact()
168 s = subject0 + s_off / COMPRESSION_RATIO; in s_NuclUngappedExtendExact()
170 start = subject0 + (s_off - q_off) / COMPRESSION_RATIO; in s_NuclUngappedExtendExact()
173 start = subject0; in s_NuclUngappedExtendExact()
210 sf = subject0 + (s_off + q_avail) / COMPRESSION_RATIO; in s_NuclUngappedExtendExact()
213 sf = subject0 + (subject->length) / COMPRESSION_RATIO; in s_NuclUngappedExtendExact()
219 s = subject0 + s_off / COMPRESSION_RATIO; in s_NuclUngappedExtendExact()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/core/ |
| H A D | na_ungapped.c | 157 Uint1 *subject0, *sf, *q_beg, *q_end, *s, *start; in s_NuclUngappedExtendExact() local
163 subject0 = subject->sequence; in s_NuclUngappedExtendExact()
168 s = subject0 + s_off / COMPRESSION_RATIO; in s_NuclUngappedExtendExact()
170 start = subject0 + (s_off - q_off) / COMPRESSION_RATIO; in s_NuclUngappedExtendExact()
173 start = subject0; in s_NuclUngappedExtendExact()
210 sf = subject0 + (s_off + q_avail) / COMPRESSION_RATIO; in s_NuclUngappedExtendExact()
213 sf = subject0 + (subject->length) / COMPRESSION_RATIO; in s_NuclUngappedExtendExact()
219 s = subject0 + s_off / COMPRESSION_RATIO; in s_NuclUngappedExtendExact()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/core/ |
| H A D | na_ungapped.c | 157 Uint1 *subject0, *sf, *q_beg, *q_end, *s, *start; in s_NuclUngappedExtendExact() local
163 subject0 = subject->sequence; in s_NuclUngappedExtendExact()
168 s = subject0 + s_off / COMPRESSION_RATIO; in s_NuclUngappedExtendExact()
170 start = subject0 + (s_off - q_off) / COMPRESSION_RATIO; in s_NuclUngappedExtendExact()
173 start = subject0; in s_NuclUngappedExtendExact()
210 sf = subject0 + (s_off + q_avail) / COMPRESSION_RATIO; in s_NuclUngappedExtendExact()
213 sf = subject0 + (subject->length) / COMPRESSION_RATIO; in s_NuclUngappedExtendExact()
219 s = subject0 + s_off / COMPRESSION_RATIO; in s_NuclUngappedExtendExact()
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| /dports/biology/p5-BioPerl/BioPerl-1.7.7/t/data/ |
| H A D | no_FH.embl | 8 FT /cds_id="subject0"
9 FT /cds_id="subject0"
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| /dports/textproc/py-rdflib/rdflib-5.0.0/docs/ |
| H A D | gettingstarted.rst | 54 (subject0, predicate0, object0),
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