Searched refs:subject_bases (Results 1 – 5 of 5) sorted by relevance
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/unit_tests/api/ |
| H A D | ntscan_unit_test.cpp | 386 Int4 query_bases, subject_bases; in ScanOffsetTestCore() local
403 subject_bases = subject_blk->length; in ScanOffsetTestCore()
491 Int4 subject_bases; in ScanMaxHitsTestCore() local
508 subject_bases = subject_blk->length; in ScanMaxHitsTestCore()
560 Int4 subject_bases; in ScanCheckHitsCore() local
577 subject_bases = subject_blk->length; in ScanCheckHitsCore()
739 SSeqRange ranges2scan[] = { {0, 501}, {700, 1001} , {subject_bases, subject_bases}}; in SkipMaskedRangesCore()
799 Int4 subject_bases; in BOOST_FIXTURE_TEST_SUITE() local
816 subject_bases = subject_blk->length; in BOOST_FIXTURE_TEST_SUITE()
828 subject_bases = subject_blk->length; in BOOST_FIXTURE_TEST_SUITE()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/unit_tests/api/ |
| H A D | ntscan_unit_test.cpp | 386 Int4 query_bases, subject_bases; in ScanOffsetTestCore() local
403 subject_bases = subject_blk->length; in ScanOffsetTestCore()
491 Int4 subject_bases; in ScanMaxHitsTestCore() local
508 subject_bases = subject_blk->length; in ScanMaxHitsTestCore()
560 Int4 subject_bases; in ScanCheckHitsCore() local
577 subject_bases = subject_blk->length; in ScanCheckHitsCore()
739 SSeqRange ranges2scan[] = { {0, 501}, {700, 1001} , {subject_bases, subject_bases}}; in SkipMaskedRangesCore()
799 Int4 subject_bases; in BOOST_FIXTURE_TEST_SUITE() local
816 subject_bases = subject_blk->length; in BOOST_FIXTURE_TEST_SUITE()
828 subject_bases = subject_blk->length; in BOOST_FIXTURE_TEST_SUITE()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/core/ |
| H A D | hspfilter_mapper.c | 763 Uint1* subject_bases = NULL; in s_TrimHSP() local
775 subject_bases = overhangs->left + overhangs->left_len; in s_TrimHSP()
778 memcpy(subject_bases, query_seq + hsp->query.offset, delta_subject); in s_TrimHSP()
790 subject_bases[edits->query_pos + offset] = edits->subject_base; in s_TrimHSP()
796 Uint1* subject_bases = NULL; in s_TrimHSP() local
810 subject_bases = overhangs->right; in s_TrimHSP()
812 memcpy(subject_bases, query_seq + hsp->query.end - delta_subject, in s_TrimHSP()
839 subject_bases[edits->query_pos + offset] = edits->subject_base; in s_TrimHSP()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/core/ |
| H A D | hspfilter_mapper.c | 763 Uint1* subject_bases = NULL; in s_TrimHSP() local
775 subject_bases = overhangs->left + overhangs->left_len; in s_TrimHSP()
778 memcpy(subject_bases, query_seq + hsp->query.offset, delta_subject); in s_TrimHSP()
790 subject_bases[edits->query_pos + offset] = edits->subject_base; in s_TrimHSP()
796 Uint1* subject_bases = NULL; in s_TrimHSP() local
810 subject_bases = overhangs->right; in s_TrimHSP()
812 memcpy(subject_bases, query_seq + hsp->query.end - delta_subject, in s_TrimHSP()
839 subject_bases[edits->query_pos + offset] = edits->subject_base; in s_TrimHSP()
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| /dports/biology/artemis/artemis-17.0.1-11-g3e43d27e/uk/ac/sanger/artemis/components/ |
| H A D | AlignmentViewer.java | 207 final Bases subject_bases = getSubjectForwardStrand().getBases(); in AlignmentViewer() local
250 subject_bases.addSequenceChangeListener(this, 0); in AlignmentViewer()
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