| /dports/biology/ncbi-toolkit/ncbi/algo/blast/api/ |
| H A D | blast_tabular.c | 157 char* subject_buffer) in FillNuclSequenceBuffers() argument
201 buffer = &subject_buffer[offset]; in FillNuclSequenceBuffers()
227 buffer = &subject_buffer[offset]; in FillNuclSequenceBuffers()
269 char* subject_buffer = NULL; in Blast_TabularFormatThread() local
378 subject_buffer = strdup("Unknown"); in Blast_TabularFormatThread()
386 Blast_SeqIdGetDefLine(subject_id, &subject_buffer, in Blast_TabularFormatThread()
397 if (subject_buffer != NULL) in Blast_TabularFormatThread()
403 if (!subject_buffer && descr) in Blast_TabularFormatThread()
404 subject_buffer = strtok(descr, " \t\n\r"); in Blast_TabularFormatThread()
513 query_buffer_ptr, subject_buffer, perc_ident, in Blast_TabularFormatThread()
[all …]
|
| H A D | blast_seq.c | 777 Uint1* subject_buffer = NULL; /* Buffer for the compressed subject in BLAST_SetUpSubject() local
795 &subject_buffer, &buffer_length))) in BLAST_SetUpSubject()
800 if ((status=BlastSetUp_SeqBlkNew(subject_buffer, buffer_length, in BLAST_SetUpSubject()
808 ++subject_buffer; in BLAST_SetUpSubject()
811 BLAST_PackDNA(subject_buffer, buffer_length, encoding, in BLAST_SetUpSubject()
|
| /dports/biology/ncbi-toolkit/ncbi/demo/ |
| H A D | megablast.c | 717 CharPtr subject_buffer; in MegaBlastPrintEndpoints() local
753 subject_buffer = (CharPtr) Malloc(16); in MegaBlastPrintEndpoints()
757 subject_descr = subject_buffer; in MegaBlastPrintEndpoints()
867 subject_buffer, context_sign, query_buffer, in MegaBlastPrintEndpoints()
872 if (!numeric_sip_type && subject_buffer != subject_descr) in MegaBlastPrintEndpoints()
873 MemFree(subject_buffer); in MegaBlastPrintEndpoints()
898 CharPtr subject_descr, subject_buffer, buffer; in MegaBlastPrintSegments() local
927 subject_descr = subject_buffer; in MegaBlastPrintSegments()
1022 subject_buffer, strand, query_buffer, in MegaBlastPrintSegments()
1082 if (!numeric_sip_type && subject_buffer != subject_descr) in MegaBlastPrintSegments()
[all …]
|
| /dports/biology/ncbi-toolkit/ncbi/network/wwwblast/Src/ |
| H A D | wwwblast.c | 722 CharPtr subject_descr, subject_buffer; in AppendMegaBlastHit() local
743 subject_buffer = (CharPtr) Malloc(BUFFER_LENGTH + 1); in AppendMegaBlastHit()
744 SeqIdWrite(SeqIdFindBestAccession(subject_id), subject_buffer, in AppendMegaBlastHit()
747 subject_buffer = StringTokMT(subject_descr, " ", &subject_descr); in AppendMegaBlastHit()
748 subject_descr = subject_buffer; in AppendMegaBlastHit()
761 new_hit->id2 = StringSave(subject_buffer); in AppendMegaBlastHit()
|
| /dports/biology/ncbi-toolkit/ncbi/tools/ |
| H A D | blfmtutl.c | 1041 Char query_buffer[BUFFER_LENGTH+1], subject_buffer[BUFFER_LENGTH+1]; in BlastPrintTabularResults() local
1146 StringCpy(subject_buffer, defline); in BlastPrintTabularResults()
1148 StringCpy(subject_buffer, defline+4); in BlastPrintTabularResults()
1152 StringCpy(subject_buffer, defline); in BlastPrintTabularResults()
1360 query_buffer, subject_buffer, perc_ident, align_length, in BlastPrintTabularResults()
|
| H A D | blastool.c | 4736 StringCpy(subject_buffer, ptr); in BlastPrintAlignInfo()
4738 StringCpy(subject_buffer, ptr+4); in BlastPrintAlignInfo()
4743 StringCpy(subject_buffer, ptr); in BlastPrintAlignInfo()
4980 buffer = &subject_buffer[offset]; in FillSequenceBuffers()
5006 buffer = &subject_buffer[offset]; in FillSequenceBuffers()
5043 CharPtr subject_descr=NULL, subject_buffer, buffer; in MegaBlastPrintAlignInfo() local
5092 subject_descr = subject_buffer; in MegaBlastPrintAlignInfo()
5314 query_buffer, subject_buffer, perc_ident, in MegaBlastPrintAlignInfo()
5333 query_buffer, subject_buffer, perc_ident, in MegaBlastPrintAlignInfo()
5345 if (!numeric_sip_type && subject_buffer != subject_descr) in MegaBlastPrintAlignInfo()
[all …]
|
| /dports/devel/cgit/cgit-1.2.3/git/ |
| H A D | log-tree.c | 386 static struct strbuf subject_buffer = STRBUF_INIT; in log_write_email_headers() local
391 strbuf_reset(&subject_buffer); in log_write_email_headers()
394 strbuf_addf(&subject_buffer, in log_write_email_headers()
409 extra_headers = subject_buffer.buf; in log_write_email_headers()
|
| /dports/devel/git-svn/git-2.34.1/ |
| H A D | log-tree.c | 444 static struct strbuf subject_buffer = STRBUF_INIT; in log_write_email_headers() local
449 strbuf_reset(&subject_buffer); in log_write_email_headers()
452 strbuf_addf(&subject_buffer, in log_write_email_headers()
467 extra_headers = subject_buffer.buf; in log_write_email_headers()
|
| /dports/devel/git-gui/git-2.34.1/ |
| H A D | log-tree.c | 444 static struct strbuf subject_buffer = STRBUF_INIT; in log_write_email_headers() local
449 strbuf_reset(&subject_buffer); in log_write_email_headers()
452 strbuf_addf(&subject_buffer, in log_write_email_headers()
467 extra_headers = subject_buffer.buf; in log_write_email_headers()
|
| /dports/devel/git-p4/git-2.34.1/ |
| H A D | log-tree.c | 444 static struct strbuf subject_buffer = STRBUF_INIT; in log_write_email_headers() local
449 strbuf_reset(&subject_buffer); in log_write_email_headers()
452 strbuf_addf(&subject_buffer, in log_write_email_headers()
467 extra_headers = subject_buffer.buf; in log_write_email_headers()
|
| /dports/devel/git/git-2.34.1/ |
| H A D | log-tree.c | 444 static struct strbuf subject_buffer = STRBUF_INIT; in log_write_email_headers() local
449 strbuf_reset(&subject_buffer); in log_write_email_headers()
452 strbuf_addf(&subject_buffer, in log_write_email_headers()
467 extra_headers = subject_buffer.buf; in log_write_email_headers()
|
| /dports/devel/git-cvs/git-2.34.1/ |
| H A D | log-tree.c | 444 static struct strbuf subject_buffer = STRBUF_INIT; in log_write_email_headers() local
449 strbuf_reset(&subject_buffer); in log_write_email_headers()
452 strbuf_addf(&subject_buffer, in log_write_email_headers()
467 extra_headers = subject_buffer.buf; in log_write_email_headers()
|