| /dports/sysutils/magicrescue/magicrescue-1.1.10/tools/ |
| H A D | textextract.c | 56 int sum_score, sum_repeats, cur_line; member
69 s->sum_score = s->sum_repeats = s->cur_line = 0; in scores_init()
88 if ((s->offset & 511) == 0 && s->sum_score < block_score) in inspect_char()
89 s->sum_score = block_score; in inspect_char()
95 s->sum_score += score; in inspect_char()
96 if (s->sum_score < 0) in inspect_char()
97 s->sum_score = 0; in inspect_char()
104 if (s->sum_score > max_score) { in inspect_char()
106 fprintf(stderr, "%d > %d\n", s->sum_score, max_score); in inspect_char()
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| /dports/biology/ncbi-toolkit/ncbi/algo/blast/core/ |
| H A D | link_hsps.c | 1144 *sum_score = new_hsp->sum_score + head_hsp->sum_score; in s_SumHSPEvalue()
1153 num, *sum_score, query_eff_length, subject_eff_length, in s_SumHSPEvalue()
1222 if (h1->sum_score < h2->sum_score) in s_SumScoreCompareLinkedHSPSets()
1224 if (h1->sum_score > h2->sum_score) in s_SumScoreCompareLinkedHSPSets()
1360 double sum_score, double evalue) in s_CombineLinkedHSPSets() argument
1384 link->sum_score = sum_score; in s_CombineLinkedHSPSets()
1522 link_hsp_array[index]->sum_score = in s_LinkedHSPSetArraySetUp()
1695 best_sum_score = head_hsp->sum_score; in s_BlastUnevenGapLinkHSPs()
1724 double evalue, sum_score; in s_BlastUnevenGapLinkHSPs() local
1729 &sum_score)) < in s_BlastUnevenGapLinkHSPs()
[all …]
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/core/ |
| H A D | link_hsps.c | 1144 *sum_score = new_hsp->sum_score + head_hsp->sum_score; in s_SumHSPEvalue()
1153 num, *sum_score, query_eff_length, subject_eff_length, in s_SumHSPEvalue()
1222 if (h1->sum_score < h2->sum_score) in s_SumScoreCompareLinkedHSPSets()
1224 if (h1->sum_score > h2->sum_score) in s_SumScoreCompareLinkedHSPSets()
1360 double sum_score, double evalue) in s_CombineLinkedHSPSets() argument
1384 link->sum_score = sum_score; in s_CombineLinkedHSPSets()
1522 link_hsp_array[index]->sum_score = in s_LinkedHSPSetArraySetUp()
1695 best_sum_score = head_hsp->sum_score; in s_BlastUnevenGapLinkHSPs()
1724 double evalue, sum_score; in s_BlastUnevenGapLinkHSPs() local
1729 &sum_score)) < in s_BlastUnevenGapLinkHSPs()
[all …]
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/core/ |
| H A D | link_hsps.c | 1144 *sum_score = new_hsp->sum_score + head_hsp->sum_score; in s_SumHSPEvalue()
1153 num, *sum_score, query_eff_length, subject_eff_length, in s_SumHSPEvalue()
1222 if (h1->sum_score < h2->sum_score) in s_SumScoreCompareLinkedHSPSets()
1224 if (h1->sum_score > h2->sum_score) in s_SumScoreCompareLinkedHSPSets()
1360 double sum_score, double evalue) in s_CombineLinkedHSPSets() argument
1384 link->sum_score = sum_score; in s_CombineLinkedHSPSets()
1522 link_hsp_array[index]->sum_score = in s_LinkedHSPSetArraySetUp()
1695 best_sum_score = head_hsp->sum_score; in s_BlastUnevenGapLinkHSPs()
1724 double evalue, sum_score; in s_BlastUnevenGapLinkHSPs() local
1729 &sum_score)) < in s_BlastUnevenGapLinkHSPs()
[all …]
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| /dports/biology/infernal/infernal-1.1.3/hmmer/src/ |
| H A D | p7_hit.c | 50 the_hit->sum_score = 0.0; in p7_hit_Create_empty()
241 network_32bit = esl_hton32(*((uint32_t *) &(obj->sum_score))); in p7_hit_Serialize()
242 memcpy((void *) ptr, (void *) &network_32bit, sizeof(obj->sum_score)); in p7_hit_Serialize()
243 ptr += sizeof(obj->sum_score); in p7_hit_Serialize()
427 ret_obj->sum_score = *((float *) &host_32bit); in p7_hit_Deserialize()
657 the_obj->sum_score = (float) esl_rand64_double(rng); in p7_hit_TestSample()
750 if(esl_FCompareNew(first->sum_score, second->sum_score, (float) atol, (float) rtol) != eslOK){ in p7_hit_Compare()
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| H A D | p7_pipeline.c | 677 float sum_score; /* the corrected reconstruction score for the seq */ in p7_Pipeline() local
763 sum_score = 0.0f; in p7_Pipeline()
773 sum_score += pli->ddef->dcl[d].envsc; /* NATS */ in p7_Pipeline()
786 sum_score += pli->ddef->dcl[d].envsc; /* NATS */ in p7_Pipeline()
792 sum_score += (sq->n-Ld) * log((float) sq->n / (float) (sq->n+3)); /* NATS */ in p7_Pipeline()
793 pre2_score = (sum_score - nullsc) / eslCONST_LOG2; /* BITS */ in p7_Pipeline()
794 sum_score = (sum_score - (nullsc + seqbias)) / eslCONST_LOG2; /* BITS */ in p7_Pipeline()
797 if (Ld > 0 && sum_score > seq_score) in p7_Pipeline()
799 seq_score = sum_score; in p7_Pipeline()
835 hit->sum_score = sum_score; /* BITS */ in p7_Pipeline()
[all …]
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| H A D | p7_tophits.c | 137 hit->sum_score = 0.0; in p7_tophits_CreateNextHit()
230 h->unsrt[h->N].sum_score = 0.0; in p7_tophits_Add()
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| H A D | mpisupport.c | 1147 …if (MPI_Pack(&hit->sum_score, 1, MPI_FLOAT, buf, n, pos, comm) != 0) ESL_XEXCEPTION(eslESY… in p7_hit_MPIPack()
1200 …if (MPI_Unpack(buf, n, pos, &hit->sum_score, 1, MPI_FLOAT, comm) != 0) ESL_XEXCEPTION(eslESYS, … in p7_hit_MPIUnpack()
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| H A D | hmmer.h | 718 float sum_score; /* bit score reconstructed from sum of domain envelopes */ member
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| /dports/biology/hmmer/hmmer-3.3/src/ |
| H A D | p7_hit.c | 50 the_hit->sum_score = 0.0; in p7_hit_Create_empty()
241 network_32bit = esl_hton32(*((uint32_t *) &(obj->sum_score))); in p7_hit_Serialize()
242 memcpy((void *) ptr, (void *) &network_32bit, sizeof(obj->sum_score)); in p7_hit_Serialize()
243 ptr += sizeof(obj->sum_score); in p7_hit_Serialize()
427 ret_obj->sum_score = *((float *) &host_32bit); in p7_hit_Deserialize()
657 the_obj->sum_score = (float) esl_rand64_double(rng); in p7_hit_TestSample()
750 if(esl_FCompareNew(first->sum_score, second->sum_score, (float) atol, (float) rtol) != eslOK){ in p7_hit_Compare()
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| H A D | p7_pipeline.c | 677 float sum_score; /* the corrected reconstruction score for the seq */ in p7_Pipeline() local
763 sum_score = 0.0f; in p7_Pipeline()
773 sum_score += pli->ddef->dcl[d].envsc; /* NATS */ in p7_Pipeline()
786 sum_score += pli->ddef->dcl[d].envsc; /* NATS */ in p7_Pipeline()
792 sum_score += (sq->n-Ld) * log((float) sq->n / (float) (sq->n+3)); /* NATS */ in p7_Pipeline()
793 pre2_score = (sum_score - nullsc) / eslCONST_LOG2; /* BITS */ in p7_Pipeline()
794 sum_score = (sum_score - (nullsc + seqbias)) / eslCONST_LOG2; /* BITS */ in p7_Pipeline()
797 if (Ld > 0 && sum_score > seq_score) in p7_Pipeline()
799 seq_score = sum_score; in p7_Pipeline()
835 hit->sum_score = sum_score; /* BITS */ in p7_Pipeline()
[all …]
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| H A D | p7_tophits.c | 137 hit->sum_score = 0.0; in p7_tophits_CreateNextHit()
230 h->unsrt[h->N].sum_score = 0.0; in p7_tophits_Add()
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| H A D | mpisupport.c | 1147 …if (MPI_Pack(&hit->sum_score, 1, MPI_FLOAT, buf, n, pos, comm) != 0) ESL_XEXCEPTION(eslESY… in p7_hit_MPIPack()
1200 …if (MPI_Unpack(buf, n, pos, &hit->sum_score, 1, MPI_FLOAT, comm) != 0) ESL_XEXCEPTION(eslESYS, … in p7_hit_MPIUnpack()
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| H A D | hmmer.h | 718 float sum_score; /* bit score reconstructed from sum of domain envelopes */ member
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| /dports/cad/PrusaSlicer/PrusaSlicer-version_2.3.3/src/libslic3r/SLA/ |
| H A D | Rotfinder.cpp | 98 double sum_score(AccessFn &&accessfn, size_t facecount, size_t Nthreads) in sum_score() function
120 return sum_score(accessfn, facecount, Nthreads) / facecount; in get_model_supportedness()
144 return sum_score(accessfn, facecount, Nthreads) / facecount; in get_model_supportedness_onfloor()
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| /dports/math/boolector/boolector-3.2.2/src/ |
| H A D | btorslvsls.h | 71 double sum_score; /* record sum of all scores for prob rand walk */ member
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| H A D | btorslvsls.c | 417 slv->sum_score += m->sc; \
926 rd = btor_rng_pick_rand_dbl (&btor->rng, 0, slv->sum_score); in select_move()
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| H A D | btorchkclone.c | 1122 BTOR_CHKCLONE_SLV_STATE (slv, cslv, sum_score); in chkclone_slv()
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| /dports/biology/iqtree/IQ-TREE-2.0.6/tree/ |
| H A D | phylotreepars.cpp | 344 int sum_score = 0; in setParsimonyBranchLengths() local
408 sum_score += subst; in setParsimonyBranchLengths()
456 sum_score += subst; in setParsimonyBranchLengths()
459 ASSERT(pars_score == sum_score); in setParsimonyBranchLengths()
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| /dports/www/qt5-webengine/qtwebengine-everywhere-src-5.15.2/src/3rdparty/chromium/third_party/libaom/source/libaom/av1/encoder/ |
| H A D | tx_search.c | 1776 float sum_score = 0.0; in prune_tx_2D() local
1790 sum_score += scores_2D[tx_idx]; in prune_tx_2D()
1796 sum_score += scores_2D[max_score_i]; in prune_tx_2D()
1807 const float inv_sum_score = 100 / sum_score; in prune_tx_2D()
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| /dports/graphics/dssim/dssim-3.1.2/cargo-crates/libaom-sys-0.9.1/vendor/av1/encoder/ |
| H A D | tx_search.c | 1825 float sum_score = 0.0; in prune_tx_2D() local
1839 sum_score += scores_2D[tx_idx]; in prune_tx_2D()
1845 sum_score += scores_2D[max_score_i]; in prune_tx_2D()
1856 const float inv_sum_score = 100 / sum_score; in prune_tx_2D()
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| /dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/libaom/source/libaom/av1/encoder/ |
| H A D | tx_search.c | 1821 float sum_score = 0.0; in prune_tx_2D() local
1835 sum_score += scores_2D[tx_idx]; in prune_tx_2D()
1841 sum_score += scores_2D[max_score_i]; in prune_tx_2D()
1852 const float inv_sum_score = 100 / sum_score; in prune_tx_2D()
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| /dports/multimedia/aom/aom-3.2.0/av1/encoder/ |
| H A D | tx_search.c | 1816 float sum_score = 0.0; in prune_tx_2D() local
1844 sum_score += scores_2D_raw[tx_idx]; in prune_tx_2D()
1874 const float inv_sum_score = 100 / sum_score; in prune_tx_2D()
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| /dports/biology/ncbi-toolkit/ncbi/tools/ |
| H A D | blast.c | 10727 Nlm_FloatHi sum_score, Nlm_FloatHi evalue) in BLAST_HSPCombineLinkedSets() argument
10752 link->xsum = sum_score; in BLAST_HSPCombineLinkedSets()
11178 double evalue, sum_score; in new_link_hsps() local
11182 lhsp, &sum_score)) < in new_link_hsps()
11186 best_sum_score = sum_score; in new_link_hsps()
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