| /dports/biology/iqtree/IQ-TREE-2.0.6/model/ |
| H A D | rateheterotachyinvar.cpp | 50 double RateHeterotachyInvar::targetFunk(double x[]) { in targetFunk() function in RateHeterotachyInvar
51 return RateHeterotachy::targetFunk(x); in targetFunk()
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| H A D | ratefreeinvar.cpp | 45 double RateFreeInvar::targetFunk(double x[]) { in targetFunk() function in RateFreeInvar
46 return RateFree::targetFunk(x); in targetFunk()
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| H A D | rateheterogeneity.cpp | 80 double RateHeterogeneity::targetFunk(double x[]) { in targetFunk() function in RateHeterogeneity
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| H A D | ratekategory.h | 77 virtual double targetFunk(double x[]);
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| H A D | modelpomomixture.cpp | 111 double ModelPoMoMixture::targetFunk(double x[]) { in targetFunk() function in ModelPoMoMixture
117 return ModelPoMo::targetFunk(x); in targetFunk()
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| H A D | ratefree.h | 62 virtual double targetFunk(double x[]);
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| H A D | rateheterotachyinvar.h | 90 virtual double targetFunk(double x[]);
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| H A D | partitionmodel.h | 119 virtual double targetFunk(double x[]);
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| H A D | rateinvar.h | 108 virtual double targetFunk(double x[]);
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| H A D | ratefreeinvar.h | 90 virtual double targetFunk(double x[]);
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| H A D | modelpomomixture.h | 90 virtual double targetFunk(double x[]);
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| H A D | rategammainvar.h | 136 virtual double targetFunk(double x[]);
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| H A D | rategamma.h | 154 virtual double targetFunk(double x[]);
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| H A D | modelfactory.h | 259 virtual double targetFunk(double x[]);
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| H A D | rateheterogeneity.h | 244 virtual double targetFunk(double x[]);
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| H A D | rateinvar.cpp | 81 double RateInvar::targetFunk(double x[]) { in targetFunk() function in RateInvar
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| H A D | modelmixture.h | 173 virtual double targetFunk(double x[]);
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| H A D | modelpomo.h | 168 virtual double targetFunk(double x[]);
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| H A D | ratekategory.cpp | 47 double RateKategory::targetFunk(double x[]) in targetFunk() function in RateKategory
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| H A D | modelmarkov.h | 303 virtual double targetFunk(double x[]);
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| H A D | partitionmodel.cpp | 276 double PartitionModel::targetFunk(double x[]) { in targetFunk() function in PartitionModel
291 res += part_model->targetFunk(x); in targetFunk()
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| /dports/biology/iqtree/IQ-TREE-2.0.6/utils/ |
| H A D | optimization.h | 137 virtual double targetFunk(double x[]) { return 0.0; } in targetFunk() function
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| H A D | optimization.cpp | 559 double new_score = targetFunk(rts-1); in minimizeNewtonMulti()
653 *f=targetFunk(x); in lnsrch()
874 double fx = targetFunk(x); in derivativeFunk()
881 dfx[dim] = (targetFunk(x)); in derivativeFunk()
1210 return targetFunk(vars-1); in optimFunc()
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| /dports/biology/iqtree/IQ-TREE-2.0.6/tree/ |
| H A D | phylotreemixlen.h | 207 virtual double targetFunk(double x[]);
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| /dports/biology/iqtree/IQ-TREE-2.0.6/obsolete/ |
| H A D | ngs.h | 228 virtual double targetFunk(double x[]);
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