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Searched refs:taxonomyDataPath (Results 1 – 8 of 8) sorted by relevance

/dports/biology/ugene/ugene-40.1/src/plugins/wevote_support/src/
H A DWevoteValidator.cpp43 …U2DataPath *taxonomyDataPath = dataPathRegistry->getDataPathByName(NgsReadsClassificationPlugin::T… in validateTaxonomy() local
44 CHECK_EXT(nullptr != taxonomyDataPath && taxonomyDataPath->isValid(), in validateTaxonomy()
49 …if (taxonomyDataPath->getPathByName(NgsReadsClassificationPlugin::TAXON_NODES_ITEM_ID).isEmpty()) { in validateTaxonomy()
54 …if (taxonomyDataPath->getPathByName(NgsReadsClassificationPlugin::TAXON_NAMES_ITEM_ID).isEmpty()) { in validateTaxonomy()
H A DPrepareWevoteTaxonomyDataTask.cpp50 …U2DataPath *taxonomyDataPath = dataPathRegistry->getDataPathByName(NgsReadsClassificationPlugin::T… in PrepareWevoteTaxonomyDataTask() local
51 SAFE_POINT_EXT(nullptr != taxonomyDataPath, setError("Taxonomy data path is not registered"), ); in PrepareWevoteTaxonomyDataTask()
52 CHECK_EXT(taxonomyDataPath->isValid(), setError(tr("Taxonomy data are missed")), ); in PrepareWevoteTaxonomyDataTask()
54 …taxonomyNamesUrl = taxonomyDataPath->getPathByName(NgsReadsClassificationPlugin::TAXON_NAMES_ITEM_… in PrepareWevoteTaxonomyDataTask()
55 …taxonomyNodesUrl = taxonomyDataPath->getPathByName(NgsReadsClassificationPlugin::TAXON_NODES_ITEM_… in PrepareWevoteTaxonomyDataTask()
/dports/biology/ugene/ugene-40.1/src/plugins/diamond_support/src/
H A DDiamondBuildValidator.cpp42 …U2DataPath *taxonomyDataPath = dataPathRegistry->getDataPathByName(NgsReadsClassificationPlugin::T… in validateTaxonomy() local
43 CHECK_EXT(nullptr != taxonomyDataPath && taxonomyDataPath->isValid(), in validateTaxonomy()
49 …if (taxonomyDataPath->getPathByName(NgsReadsClassificationPlugin::TAXON_PROT_ACCESSION_2_TAXID_ITE… in validateTaxonomy()
54 …if (taxonomyDataPath->getPathByName(NgsReadsClassificationPlugin::TAXON_NODES_ITEM_ID).isEmpty()) { in validateTaxonomy()
H A DDiamondBuildWorker.cpp112 …U2DataPath *taxonomyDataPath = dataPathRegistry->getDataPathByName(NgsReadsClassificationPlugin::T… in getSettings() local
113 …CHECK_EXT(nullptr != taxonomyDataPath && taxonomyDataPath->isValid(), os.setError(tr("Taxonomy cla… in getSettings()
114 …settings.taxonMapUrl = taxonomyDataPath->getPathByName(NgsReadsClassificationPlugin::TAXON_PROT_AC… in getSettings()
115 …settings.taxonNodesUrl = taxonomyDataPath->getPathByName(NgsReadsClassificationPlugin::TAXON_NODES… in getSettings()
/dports/biology/ugene/ugene-40.1/src/plugins/clark_support/src/
H A DClarkBuildWorker.cpp85 …U2DataPath *taxonomyDataPath = AppContext::getDataPathRegistry()->getDataPathByName(NgsReadsClassi… in validateTaxonomy() local
86 CHECK_EXT(nullptr != taxonomyDataPath && taxonomyDataPath->isValid(), in validateTaxonomy()
92 …const QString nuclGbAccession2Taxid = taxonomyDataPath->getPathByName(NgsReadsClassificationPlugin… in validateTaxonomy()
93 …const QString nuclWgsAccession2Taxid = taxonomyDataPath->getPathByName(NgsReadsClassificationPlugi… in validateTaxonomy()
94 …const QString mergedDmp = taxonomyDataPath->getPathByName(NgsReadsClassificationPlugin::TAXON_MERG… in validateTaxonomy()
95 …const QString namesDmp = taxonomyDataPath->getPathByName(NgsReadsClassificationPlugin::TAXON_NAMES… in validateTaxonomy()
96 …const QString nodesDmp = taxonomyDataPath->getPathByName(NgsReadsClassificationPlugin::TAXON_NODES… in validateTaxonomy()
97 …const QString taxDump = taxonomyDataPath->getPathByName(NgsReadsClassificationPlugin::TAXON_TAXDUM… in validateTaxonomy()
232 …U2DataPath *taxonomyDataPath = AppContext::getDataPathRegistry()->getDataPathByName(NgsReadsClassi… in tick() local
233 …CHECK(nullptr != taxonomyDataPath && taxonomyDataPath->isValid(), new FailTask(tr("Taxonomy classi… in tick()
[all …]
/dports/biology/ugene/ugene-40.1/src/plugins/kraken_support/src/
H A DKrakenBuildValidator.cpp52 …U2DataPath *taxonomyDataPath = AppContext::getDataPathRegistry()->getDataPathByName(NgsReadsClassi… in validateTaxonomy() local
53 CHECK_EXT(nullptr != taxonomyDataPath && taxonomyDataPath->isValid(), in validateTaxonomy()
68 if (taxonomyDataPath->getPathByName(neccessaryItem).isEmpty()) { in validateTaxonomy()
H A DKrakenBuildTask.cpp127 …U2DataPath *taxonomyDataPath = AppContext::getDataPathRegistry()->getDataPathByName(NgsReadsClassi… in checkTaxonomy() local
128 …CHECK_EXT(nullptr != taxonomyDataPath && taxonomyDataPath->isValid(), setError(tr("Taxonomy data a… in checkTaxonomy()
142 …U2DataPath *taxonomyDataPath = AppContext::getDataPathRegistry()->getDataPathByName(NgsReadsClassi… in prepareTaxonomyData() local
143 …CHECK_EXT(nullptr != taxonomyDataPath && taxonomyDataPath->isValid(), setError(tr("Cannot find tax… in prepareTaxonomyData()
144 const QString sourceDirUrl = taxonomyDataPath->getPath(); in prepareTaxonomyData()
/dports/biology/ugene/ugene-40.1/src/plugins/ngs_reads_classification/src/
H A DTaxonomySupport.cpp200 …U2DataPath *taxonomyDataPath = dataPathRegistry->getDataPathByName(NgsReadsClassificationPlugin::T… in load() local
201 …CHECK_EXT(nullptr != taxonomyDataPath && taxonomyDataPath->isValid(), algoLog.details(QString("Tax… in load()
205 …QString nodesUrl = taxonomyDataPath->getPathByName(NgsReadsClassificationPlugin::TAXON_NODES_ITEM_… in load()
268 …QString namesUrl = taxonomyDataPath->getPathByName(NgsReadsClassificationPlugin::TAXON_NAMES_ITEM_… in load()