Searched refs:taxonomyDataPath (Results 1 – 8 of 8) sorted by relevance
/dports/biology/ugene/ugene-40.1/src/plugins/wevote_support/src/ |
H A D | WevoteValidator.cpp | 43 …U2DataPath *taxonomyDataPath = dataPathRegistry->getDataPathByName(NgsReadsClassificationPlugin::T… in validateTaxonomy() local 44 CHECK_EXT(nullptr != taxonomyDataPath && taxonomyDataPath->isValid(), in validateTaxonomy() 49 …if (taxonomyDataPath->getPathByName(NgsReadsClassificationPlugin::TAXON_NODES_ITEM_ID).isEmpty()) { in validateTaxonomy() 54 …if (taxonomyDataPath->getPathByName(NgsReadsClassificationPlugin::TAXON_NAMES_ITEM_ID).isEmpty()) { in validateTaxonomy()
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H A D | PrepareWevoteTaxonomyDataTask.cpp | 50 …U2DataPath *taxonomyDataPath = dataPathRegistry->getDataPathByName(NgsReadsClassificationPlugin::T… in PrepareWevoteTaxonomyDataTask() local 51 SAFE_POINT_EXT(nullptr != taxonomyDataPath, setError("Taxonomy data path is not registered"), ); in PrepareWevoteTaxonomyDataTask() 52 CHECK_EXT(taxonomyDataPath->isValid(), setError(tr("Taxonomy data are missed")), ); in PrepareWevoteTaxonomyDataTask() 54 …taxonomyNamesUrl = taxonomyDataPath->getPathByName(NgsReadsClassificationPlugin::TAXON_NAMES_ITEM_… in PrepareWevoteTaxonomyDataTask() 55 …taxonomyNodesUrl = taxonomyDataPath->getPathByName(NgsReadsClassificationPlugin::TAXON_NODES_ITEM_… in PrepareWevoteTaxonomyDataTask()
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/dports/biology/ugene/ugene-40.1/src/plugins/diamond_support/src/ |
H A D | DiamondBuildValidator.cpp | 42 …U2DataPath *taxonomyDataPath = dataPathRegistry->getDataPathByName(NgsReadsClassificationPlugin::T… in validateTaxonomy() local 43 CHECK_EXT(nullptr != taxonomyDataPath && taxonomyDataPath->isValid(), in validateTaxonomy() 49 …if (taxonomyDataPath->getPathByName(NgsReadsClassificationPlugin::TAXON_PROT_ACCESSION_2_TAXID_ITE… in validateTaxonomy() 54 …if (taxonomyDataPath->getPathByName(NgsReadsClassificationPlugin::TAXON_NODES_ITEM_ID).isEmpty()) { in validateTaxonomy()
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H A D | DiamondBuildWorker.cpp | 112 …U2DataPath *taxonomyDataPath = dataPathRegistry->getDataPathByName(NgsReadsClassificationPlugin::T… in getSettings() local 113 …CHECK_EXT(nullptr != taxonomyDataPath && taxonomyDataPath->isValid(), os.setError(tr("Taxonomy cla… in getSettings() 114 …settings.taxonMapUrl = taxonomyDataPath->getPathByName(NgsReadsClassificationPlugin::TAXON_PROT_AC… in getSettings() 115 …settings.taxonNodesUrl = taxonomyDataPath->getPathByName(NgsReadsClassificationPlugin::TAXON_NODES… in getSettings()
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/dports/biology/ugene/ugene-40.1/src/plugins/clark_support/src/ |
H A D | ClarkBuildWorker.cpp | 85 …U2DataPath *taxonomyDataPath = AppContext::getDataPathRegistry()->getDataPathByName(NgsReadsClassi… in validateTaxonomy() local 86 CHECK_EXT(nullptr != taxonomyDataPath && taxonomyDataPath->isValid(), in validateTaxonomy() 92 …const QString nuclGbAccession2Taxid = taxonomyDataPath->getPathByName(NgsReadsClassificationPlugin… in validateTaxonomy() 93 …const QString nuclWgsAccession2Taxid = taxonomyDataPath->getPathByName(NgsReadsClassificationPlugi… in validateTaxonomy() 94 …const QString mergedDmp = taxonomyDataPath->getPathByName(NgsReadsClassificationPlugin::TAXON_MERG… in validateTaxonomy() 95 …const QString namesDmp = taxonomyDataPath->getPathByName(NgsReadsClassificationPlugin::TAXON_NAMES… in validateTaxonomy() 96 …const QString nodesDmp = taxonomyDataPath->getPathByName(NgsReadsClassificationPlugin::TAXON_NODES… in validateTaxonomy() 97 …const QString taxDump = taxonomyDataPath->getPathByName(NgsReadsClassificationPlugin::TAXON_TAXDUM… in validateTaxonomy() 232 …U2DataPath *taxonomyDataPath = AppContext::getDataPathRegistry()->getDataPathByName(NgsReadsClassi… in tick() local 233 …CHECK(nullptr != taxonomyDataPath && taxonomyDataPath->isValid(), new FailTask(tr("Taxonomy classi… in tick() [all …]
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/dports/biology/ugene/ugene-40.1/src/plugins/kraken_support/src/ |
H A D | KrakenBuildValidator.cpp | 52 …U2DataPath *taxonomyDataPath = AppContext::getDataPathRegistry()->getDataPathByName(NgsReadsClassi… in validateTaxonomy() local 53 CHECK_EXT(nullptr != taxonomyDataPath && taxonomyDataPath->isValid(), in validateTaxonomy() 68 if (taxonomyDataPath->getPathByName(neccessaryItem).isEmpty()) { in validateTaxonomy()
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H A D | KrakenBuildTask.cpp | 127 …U2DataPath *taxonomyDataPath = AppContext::getDataPathRegistry()->getDataPathByName(NgsReadsClassi… in checkTaxonomy() local 128 …CHECK_EXT(nullptr != taxonomyDataPath && taxonomyDataPath->isValid(), setError(tr("Taxonomy data a… in checkTaxonomy() 142 …U2DataPath *taxonomyDataPath = AppContext::getDataPathRegistry()->getDataPathByName(NgsReadsClassi… in prepareTaxonomyData() local 143 …CHECK_EXT(nullptr != taxonomyDataPath && taxonomyDataPath->isValid(), setError(tr("Cannot find tax… in prepareTaxonomyData() 144 const QString sourceDirUrl = taxonomyDataPath->getPath(); in prepareTaxonomyData()
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/dports/biology/ugene/ugene-40.1/src/plugins/ngs_reads_classification/src/ |
H A D | TaxonomySupport.cpp | 200 …U2DataPath *taxonomyDataPath = dataPathRegistry->getDataPathByName(NgsReadsClassificationPlugin::T… in load() local 201 …CHECK_EXT(nullptr != taxonomyDataPath && taxonomyDataPath->isValid(), algoLog.details(QString("Tax… in load() 205 …QString nodesUrl = taxonomyDataPath->getPathByName(NgsReadsClassificationPlugin::TAXON_NODES_ITEM_… in load() 268 …QString namesUrl = taxonomyDataPath->getPathByName(NgsReadsClassificationPlugin::TAXON_NAMES_ITEM_… in load()
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