/dports/biology/babel/babel-1.6/ |
H A D | rdgauout.c | 27 char the_line[BUFF_SIZE]; in read_gau_out() local 36 while (fgets(the_line,sizeof(the_line), file1) != NULL) in read_gau_out() 50 fgets(the_line,sizeof(the_line), file1); in read_gau_out() 53 fgets(the_line,sizeof(the_line), file1); in read_gau_out() 57 fgets(the_line,sizeof(the_line), file1); in read_gau_out() 78 fgets(the_line,sizeof(the_line), file1); in read_gau_out() 104 while (fgets(the_line,sizeof(the_line), file1)) in read_gau_out() 108 while (fgets(the_line,sizeof(the_line), file1)) in read_gau_out() 128 char the_line[BUFF_SIZE]; in read_gaussian_cartesian_atoms() local 132 fgets(the_line,sizeof(the_line), file1); in read_gaussian_cartesian_atoms() [all …]
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H A D | rdisis.c | 36 fgets(the_line,sizeof(the_line),file1); in read_isis() 44 strcpy(previous,the_line); in read_isis() 46 fgets(the_line,sizeof(the_line),file1); in read_isis() 49 fgets(the_line,sizeof(the_line),file1); in read_isis() 50 my_strncpy(temp,the_line,3); in read_isis() 62 fgets(the_line,sizeof(the_line),file1); in read_isis() 76 fgets(the_line,sizeof(the_line),file1); in read_isis() 92 fgets(the_line,sizeof(the_line),file1); in read_isis() 95 fgets(the_line,sizeof(the_line),file1); in read_isis() 105 fgets(the_line,sizeof(the_line),file1); in read_isis() [all …]
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H A D | rdmm3.c | 34 fgets(the_line,sizeof(the_line),file1); in read_mm3() 43 fgets(the_line,sizeof(the_line),file1); in read_mm3() 51 fgets(the_line,sizeof(the_line),file1); in read_mm3() 53 fgets(the_line,sizeof(the_line),file1); in read_mm3() 55 fgets(the_line,sizeof(the_line),file1); in read_mm3() 57 fgets(the_line,sizeof(the_line),file1); in read_mm3() 68 fgets(the_line,sizeof(the_line),file1); in read_mm3() 71 fgets(the_line,sizeof(the_line),file1); in read_mm3() 76 fgets(the_line,sizeof(the_line),file1); in read_mm3() 93 fgets(the_line,sizeof(the_line),file1); in read_mm3() [all …]
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H A D | rdmm2in.c | 37 fgets(the_line,sizeof(the_line),file1); in read_mm2_input() 39 fgets(the_line,sizeof(the_line),file1); in read_mm2_input() 49 fgets(the_line,sizeof(the_line),file1); in read_mm2_input() 57 fgets(the_line,sizeof(the_line),file1); in read_mm2_input() 59 fgets(the_line,sizeof(the_line),file1); in read_mm2_input() 61 fgets(the_line,sizeof(the_line),file1); in read_mm2_input() 63 fgets(the_line,sizeof(the_line),file1); in read_mm2_input() 73 fgets(the_line,sizeof(the_line),file1); in read_mm2_input() 81 fgets(the_line,sizeof(the_line),file1); in read_mm2_input() 98 fgets(the_line,sizeof(the_line),file1); in read_mm2_input() [all …]
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H A D | rdbgf.c | 24 char the_line[BUFF_SIZE]; in read_bgf() local 31 while (fgets(the_line,sizeof(the_line),file1)) in read_bgf() 42 while (fgets(the_line,sizeof(the_line),file1)) in read_bgf() 44 if ((EQn(the_line,"ATOM",4)) || (EQn(the_line,"HETATM",6))) in read_bgf() 56 fgets(the_line,sizeof(the_line), file1); in read_bgf() 67 fgets(the_line,sizeof(the_line), file1); in read_bgf() 71 while (fgets(the_line,sizeof(the_line), file1)) in read_bgf() 78 the_line[80] = '\0'; in read_bgf() 101 while (fgets(the_line,sizeof(the_line), file1)) in read_bgf() 103 if (EQn(the_line,"END",3)) in read_bgf() [all …]
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H A D | rdcadpac.c | 33 while (fgets(the_line,sizeof(the_line), file1) != NULL) in read_cadpac() 48 fgets(the_line,sizeof(the_line),file1); in read_cadpac() 49 fgets(the_line,sizeof(the_line),file1); in read_cadpac() 54 fgets(the_line,sizeof(the_line),file1); in read_cadpac() 61 fgets(the_line,sizeof(the_line),file1); in read_cadpac() 62 fgets(the_line,sizeof(the_line),file1); in read_cadpac() 68 fgets(the_line,sizeof(the_line),file1); in read_cadpac() 84 fgets(the_line,sizeof(the_line),file1); in read_cadpac() 87 fgets(the_line,sizeof(the_line),file1); in read_cadpac() 92 fgets(the_line,sizeof(the_line),file1); in read_cadpac() [all …]
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H A D | rdmdl.c | 40 fgets(the_line,sizeof(the_line),file1); in read_mdl() 47 fgets(the_line,sizeof(the_line),file1); in read_mdl() 49 fgets(the_line,sizeof(the_line),file1); in read_mdl() 62 fgets(the_line,sizeof(the_line),file1); in read_mdl() 80 fgets(the_line,sizeof(the_line),file1); in read_mdl() 82 the_line[3] = '\0'; in read_mdl() 97 fgets(the_line,sizeof(the_line),file1); in read_mdl() 111 fgets(the_line,sizeof(the_line),file1); in read_mdl() 127 fgets(the_line,sizeof(the_line),file1); in read_mdl() 129 if ((strstr(the_line,"END")) || (strstr(the_line,"$$$"))) in read_mdl() [all …]
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H A D | rdgamout.c | 39 while (fgets(the_line,sizeof(the_line), file1) != NULL) in read_gamess_output() 46 fgets(the_line,sizeof(the_line), file1); in read_gamess_output() 47 fgets(the_line,sizeof(the_line), file1); in read_gamess_output() 52 if (fgets(the_line,sizeof(the_line), file1) != NULL) in read_gamess_output() 64 while (fgets(the_line,sizeof(the_line), file1) != NULL) in read_gamess_output() 72 fgets(the_line,sizeof(the_line), file1); in read_gamess_output() 73 fgets(the_line,sizeof(the_line), file1); in read_gamess_output() 76 if (fgets(the_line,sizeof(the_line), file1) != NULL) in read_gamess_output() 88 fgets(the_line,sizeof(the_line), file1); in read_gamess_output() 90 fgets(the_line,sizeof(the_line), file1); in read_gamess_output() [all …]
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H A D | rdpsgvin.c | 28 char the_line[BUFF_SIZE]; in read_psgvb_input() local 50 while (fgets(the_line,sizeof(the_line), file1) != NULL) in read_psgvb_input() 53 printf("%d -> %s\n",++iline,the_line); in read_psgvb_input() 55 if (count_tokens(the_line,PSGVB_DELIMS) == 0) in read_psgvb_input() 66 while ( fgets(the_line,sizeof(the_line), file1) != NULL) in read_psgvb_input() 71 if (the_line[0] == '$' || the_line[0] == '&') in read_psgvb_input() 96 while (fgets(the_line,sizeof(the_line), file1) != NULL) in read_psgvb_input() 99 printf("%d -> %s",sym_count,the_line); in read_psgvb_input() 101 if (the_line[0] == '$' || the_line[0] == '&') in read_psgvb_input() 104 tokens = count_tokens(the_line,PSGVB_DELIMS); in read_psgvb_input() [all …]
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H A D | rdpsgout.c | 26 char the_line[BUFF_SIZE]; in read_psgvb_output() local 34 while (fgets(the_line,sizeof(the_line), file1) != NULL) in read_psgvb_output() 38 for (sp=the_line; *sp; sp++) in read_psgvb_output() 45 if (strstr(the_line,"SCFE")) in read_psgvb_output() 53 printf(" -> %s\n",the_line); in read_psgvb_output() 56 fgets(the_line,sizeof(the_line), file1); in read_psgvb_output() 60 while (fgets(the_line,sizeof(the_line), file1) != NULL) in read_psgvb_output() 70 printf("(done)-> %s\n",the_line); in read_psgvb_output() 93 fgets(the_line,sizeof(the_line), file1); in read_psgvb_output() 96 printf("%d -> %s\n",i,the_line); in read_psgvb_output() [all …]
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H A D | rdgzmat.c | 25 char the_line[BUFF_SIZE]; in read_gau_zmatrix() local 40 while (fgets(the_line,sizeof(the_line), file1) != NULL) in read_gau_zmatrix() 42 if (the_line[0] == '#') in read_gau_zmatrix() 45 while (fgets(the_line,sizeof(the_line), file1) != NULL) in read_gau_zmatrix() 47 if (is_blank_line(the_line)) in read_gau_zmatrix() 54 while (fgets(the_line,sizeof(the_line), file1) != NULL) in read_gau_zmatrix() 56 if (is_blank_line(the_line)) in read_gau_zmatrix() 74 while ((fgets(the_line,sizeof(the_line), file1) != NULL)) in read_gau_zmatrix() 80 while (fgets(the_line,sizeof(the_line), file1) != NULL) in read_gau_zmatrix() 82 if (count_tokens(the_line," =\t\n") == 2) in read_gau_zmatrix() [all …]
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H A D | rdg96.c | 36 res = fgets(the_line,nsz,f); in gline() 38 res = fgets(the_line,nsz,f); in gline() 49 char the_line[BUFF_SIZE]; in cnt_atms() local 53 res = gline(the_line,BUFF_SIZE,f); in cnt_atms() 57 res = gline(the_line,BUFF_SIZE,f); in cnt_atms() 65 char the_line[BUFF_SIZE]; in rd_sco_gr96() local 75 res = gline(the_line,BUFF_SIZE,file1); in rd_sco_gr96() 83 if (strcmp(the_line,titstr) ==0){ in rd_sco_gr96() 94 strncpy(Title,the_line,200); in rd_sco_gr96() 96 res = gline(the_line,BUFF_SIZE,file1); in rd_sco_gr96() [all …]
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H A D | rdhin.c | 24 char the_line[300]; in read_hin() local 32 while (strstr(the_line,"mol") == NULL) in read_hin() 33 fgets(the_line,sizeof(the_line),file1); in read_hin() 35 if (strstr(the_line,"mol ") != NULL) in read_hin() 42 fgets(the_line,sizeof(the_line),file1); in read_hin() 43 if (strstr(the_line,"atom")) in read_hin() 54 strcpy(the_line,""); in read_hin() 57 fgets(the_line,sizeof(the_line),file1); in read_hin() 58 if (strstr(the_line,"atom")) in read_hin() 76 get_token(temp,the_line,DELIMS,j); in read_hin() [all …]
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H A D | rdspmm.c | 26 char the_line[BUFF_SIZE]; in read_spartan_mol_mech() local 34 while ((fgets(the_line,sizeof(the_line), file1) != NULL) && (i < 2)) in read_spartan_mol_mech() 36 if (strstr(the_line,"Cartesian")) in read_spartan_mol_mech() 45 fgets(the_line,sizeof(the_line), file1); in read_spartan_mol_mech() 51 fgets(the_line,sizeof(the_line), file1); in read_spartan_mol_mech() 52 tokens = count_tokens(the_line," \n\t"); in read_spartan_mol_mech() 60 fgets(the_line,sizeof(the_line), file1); in read_spartan_mol_mech() 64 while ((fgets(the_line,sizeof(the_line), file1) != NULL) && (!done)) in read_spartan_mol_mech() 66 if (strstr(the_line,"Minimization complete")) in read_spartan_mol_mech() 68 fgets(the_line,sizeof(the_line), file1); in read_spartan_mol_mech() [all …]
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H A D | rdinsite.c | 24 char the_line[300]; in read_biosym_car() local 32 while ((fgets(the_line,sizeof(the_line),file1) != NULL) && (!done)) in read_biosym_car() 34 if (strstr(the_line,"PBC")) in read_biosym_car() 37 strcpy(pbc_line,the_line); in read_biosym_car() 45 fgets(the_line,sizeof(the_line),file1); in read_biosym_car() 48 the_line[0] = '\0'; in read_biosym_car() 49 while (strstr(the_line,"end") == NULL) in read_biosym_car() 51 fgets(the_line,sizeof(the_line),file1); in read_biosym_car() 64 fgets(the_line,sizeof(the_line), file1); in read_biosym_car() 72 fgets(the_line,sizeof(the_line),file1); in read_biosym_car() [all …]
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H A D | rdsybmol.c | 24 char the_line[BUFF_SIZE]; in read_sybyl_mol() local 30 fgets(the_line,sizeof(the_line), file1); in read_sybyl_mol() 31 sscanf(the_line,"%d",&Atoms); in read_sybyl_mol() 39 fgets(the_line,sizeof(the_line), file1); in read_sybyl_mol() 40 sscanf(the_line,"%*d %s %lf %lf", in read_sybyl_mol() 44 my_strncpy(temp2,&the_line[26],9); in read_sybyl_mol() 49 fgets(the_line,sizeof(the_line), file1); in read_sybyl_mol() 50 sscanf(the_line,"%d",&Bonds); in read_sybyl_mol() 53 fgets(the_line,sizeof(the_line), file1); in read_sybyl_mol() 54 sscanf(the_line,"%*d %d %d %d", in read_sybyl_mol() [all …]
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H A D | rdspart.c | 26 char the_line[BUFF_SIZE]; in read_spartan() local 35 while ((fgets(the_line,sizeof(the_line), file1) != NULL) && in read_spartan() 36 (strstr(the_line,"ENDCART") == NULL)) in read_spartan() 51 fgets(the_line,sizeof(the_line),file1); in read_spartan() 54 fgets(the_line,sizeof(the_line),file1); in read_spartan() 59 while ((fgets(the_line,sizeof(the_line), file1) != NULL) && in read_spartan() 60 (strstr(the_line,"HESSIAN") == NULL)); in read_spartan() 70 fgets(the_line,sizeof(the_line),file1); in read_spartan() 76 sscanf(&the_line[k],"%s",temp1); in read_spartan() 86 while ((fgets(the_line,sizeof(the_line), file1) != NULL) && in read_spartan() [all …]
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H A D | rdspsemi.c | 25 char the_line[BUFF_SIZE]; in read_spartan_semiempirical() local 33 while ((fgets(the_line,sizeof(the_line), file1) != NULL) && (i < 2)) in read_spartan_semiempirical() 35 if (strstr(the_line,"Cartesian")) in read_spartan_semiempirical() 42 fgets(the_line,sizeof(the_line), file1); in read_spartan_semiempirical() 48 fgets(the_line,sizeof(the_line), file1); in read_spartan_semiempirical() 49 tokens = count_tokens(the_line," \n\t"); in read_spartan_semiempirical() 57 fgets(the_line,sizeof(the_line), file1); in read_spartan_semiempirical() 58 sscanf(the_line,"%s %*d %lf %lf %lf",Type(i),&X(i),&Y(i),&Z(i)); in read_spartan_semiempirical() 60 while ((fgets(the_line,sizeof(the_line), file1) != NULL) && (!done)) in read_spartan_semiempirical() 62 if (strstr(the_line,"Heat")) in read_spartan_semiempirical() [all …]
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H A D | rdshelx.c | 25 char the_line[BUFF_SIZE]; in read_shelx() local 33 while (fgets(the_line,sizeof(the_line), file1) != NULL) in read_shelx() 35 if (count_tokens(the_line,"\n\t ") > 0) in read_shelx() 39 sscanf(the_line,"%*s%*s%lf%lf%lf%lf%lf%lf", in read_shelx() 46 if (is_good_shelx_line(the_line)) in read_shelx() 54 while (fgets(the_line,sizeof(the_line), file1) != NULL) in read_shelx() 55 if (is_good_shelx_line(the_line)) in read_shelx() 76 int count_shelx_atoms(char *the_line) in count_shelx_atoms() argument 105 int is_good_shelx_line(char *the_line) in is_good_shelx_line() argument 112 if ((strchr(the_line,'(')) || (strchr(the_line,')'))) in is_good_shelx_line() [all …]
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H A D | rdschak.c | 26 char the_line[BUFF_SIZE]; in read_schakal() local 34 fgets(the_line,sizeof(the_line),file1); in read_schakal() 35 sscanf(the_line,"%d",&Atoms); in read_schakal() 39 while ((fgets(the_line,sizeof(the_line), file1) != NULL) && NOTEQn(the_line,"END",3)) in read_schakal() 41 if (EQn(the_line,"CELL",4)) in read_schakal() 43 tokens = count_tokens(the_line,"\t \n"); in read_schakal() 46 sscanf(the_line,"%*s%lf%lf%lf%lf%lf%lf",&f.A,&f.B,&f.C,&f.Alpha,&f.Beta,&f.Gamma); in read_schakal() 51 if (EQn(the_line,"ATOM",4)) in read_schakal() 63 while ((fgets(the_line,sizeof(the_line), file1) != NULL) && NOTEQn(the_line,"END",3)) in read_schakal() 65 if (EQn(the_line,"ATOM",4)) in read_schakal() [all …]
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H A D | rddpdb.c | 27 char the_line[BUFF_SIZE]; in read_dock_pdb() local 37 while ((fgets(the_line,sizeof(the_line), file1) != NULL) && NOTEQn(the_line,"TER",3)) in read_dock_pdb() 39 if (EQn(the_line,"ATOM",4)) in read_dock_pdb() 48 fgets(the_line,sizeof(the_line), file1); in read_dock_pdb() 49 sscanf(&the_line[6],"%s",temp_title); in read_dock_pdb() 52 while ((fgets(the_line,sizeof(the_line), file1) != NULL) && NOTEQn(the_line,"TER",3)) in read_dock_pdb() 54 if ((EQn(the_line,"REMARK",6)) &&(strstr(the_line,"score"))) in read_dock_pdb() 56 sscanf(the_line,"%*s %*s %*s %*s %lf",&Energy); in read_dock_pdb() 61 if (EQn(the_line,"ATOM",4)) in read_dock_pdb() 64 sscanf(the_line,"%*s%*s %*s %*s%*s %lf%lf%lf%lf%*s%s", in read_dock_pdb()
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H A D | rdcharmm.c | 25 char the_line[BUFF_SIZE]; in read_charmm() local 30 while ((fgets(the_line,sizeof(the_line), file1) != NULL) && (the_line[0] == '*')); in read_charmm() 31 sscanf(the_line,"%d",&Atoms); in read_charmm() 38 fgets(the_line,sizeof(the_line), file1); in read_charmm() 43 if (isspace(the_line[15])) in read_charmm() 45 Type(i)[0] = the_line[16]; in read_charmm() 50 Type(i)[0] = the_line[15]; in read_charmm() 51 Type(i)[1] = the_line[16]; in read_charmm() 54 sscanf(&the_line[22],"%lf",&X(i)); in read_charmm() 55 sscanf(&the_line[32],"%lf",&Y(i)); in read_charmm() [all …]
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H A D | rdmm2.c | 27 char the_line[BUFF_SIZE]; in read_mm2() local 34 fgets(the_line,sizeof(the_line),file1); in read_mm2() 35 fgets(the_line,sizeof(the_line),file1); in read_mm2() 36 sscanf(the_line,"%lf",&strain); in read_mm2() 37 fgets(the_line,sizeof(the_line),file1); in read_mm2() 38 sscanf(the_line,"%d%d",&Atoms,&Bonds); in read_mm2() 57 fgets(the_line,sizeof(the_line),file1); in read_mm2() 58 sscanf(the_line,"%lf%lf%lf%s%lf%lf%lf%s", in read_mm2() 68 fgets(the_line,sizeof(the_line),file1); in read_mm2() 78 fgets(the_line,sizeof(the_line),file1); in read_mm2() [all …]
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H A D | rddock.c | 33 char the_line[BUFF_SIZE]; in read_dock_database() local 40 fgets(the_line,sizeof(the_line),file1); in read_dock_database() 44 fgets(the_line,sizeof(the_line),file1); in read_dock_database() 45 my_strncpy(buffer,&the_line[0],50); in read_dock_database() 47 fgets(the_line,sizeof(the_line),file1); in read_dock_database() 48 sscanf(the_line,"%d",&Atoms); in read_dock_database() 61 fgets(the_line,sizeof(the_line), file1); in read_dock_database() 63 my_strncpy(buffer,&the_line[0],5); in read_dock_database() 66 my_strncpy(buffer,&the_line[5],5); in read_dock_database() 69 my_strncpy(buffer,&the_line[10],5); in read_dock_database() [all …]
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/dports/biology/mapm3/mapm3-3.0_1/readline/ |
H A D | vi_mode.c | 81 the_line[0] = 0; 131 vi_last_search = savestring (the_line); 132 rl_vi_dosearch (the_line, dir); 164 strcpy (the_line, h->line); 166 rl_end = strlen (the_line); 308 if (isident (the_line[rl_point])) 335 if (isident (the_line[rl_point]) && !isident (the_line[rl_point - 1])) 458 c = to_lower (the_line[rl_point]); 460 c = to_upper (the_line[rl_point]); 733 if (the_line[pos] == target) [all …]
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