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Searched refs:the_line (Results 1 – 25 of 174) sorted by relevance

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/dports/biology/babel/babel-1.6/
H A Drdgauout.c27 char the_line[BUFF_SIZE]; in read_gau_out() local
36 while (fgets(the_line,sizeof(the_line), file1) != NULL) in read_gau_out()
50 fgets(the_line,sizeof(the_line), file1); in read_gau_out()
53 fgets(the_line,sizeof(the_line), file1); in read_gau_out()
57 fgets(the_line,sizeof(the_line), file1); in read_gau_out()
78 fgets(the_line,sizeof(the_line), file1); in read_gau_out()
104 while (fgets(the_line,sizeof(the_line), file1)) in read_gau_out()
108 while (fgets(the_line,sizeof(the_line), file1)) in read_gau_out()
128 char the_line[BUFF_SIZE]; in read_gaussian_cartesian_atoms() local
132 fgets(the_line,sizeof(the_line), file1); in read_gaussian_cartesian_atoms()
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H A Drdisis.c36 fgets(the_line,sizeof(the_line),file1); in read_isis()
44 strcpy(previous,the_line); in read_isis()
46 fgets(the_line,sizeof(the_line),file1); in read_isis()
49 fgets(the_line,sizeof(the_line),file1); in read_isis()
50 my_strncpy(temp,the_line,3); in read_isis()
62 fgets(the_line,sizeof(the_line),file1); in read_isis()
76 fgets(the_line,sizeof(the_line),file1); in read_isis()
92 fgets(the_line,sizeof(the_line),file1); in read_isis()
95 fgets(the_line,sizeof(the_line),file1); in read_isis()
105 fgets(the_line,sizeof(the_line),file1); in read_isis()
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H A Drdmm3.c34 fgets(the_line,sizeof(the_line),file1); in read_mm3()
43 fgets(the_line,sizeof(the_line),file1); in read_mm3()
51 fgets(the_line,sizeof(the_line),file1); in read_mm3()
53 fgets(the_line,sizeof(the_line),file1); in read_mm3()
55 fgets(the_line,sizeof(the_line),file1); in read_mm3()
57 fgets(the_line,sizeof(the_line),file1); in read_mm3()
68 fgets(the_line,sizeof(the_line),file1); in read_mm3()
71 fgets(the_line,sizeof(the_line),file1); in read_mm3()
76 fgets(the_line,sizeof(the_line),file1); in read_mm3()
93 fgets(the_line,sizeof(the_line),file1); in read_mm3()
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H A Drdmm2in.c37 fgets(the_line,sizeof(the_line),file1); in read_mm2_input()
39 fgets(the_line,sizeof(the_line),file1); in read_mm2_input()
49 fgets(the_line,sizeof(the_line),file1); in read_mm2_input()
57 fgets(the_line,sizeof(the_line),file1); in read_mm2_input()
59 fgets(the_line,sizeof(the_line),file1); in read_mm2_input()
61 fgets(the_line,sizeof(the_line),file1); in read_mm2_input()
63 fgets(the_line,sizeof(the_line),file1); in read_mm2_input()
73 fgets(the_line,sizeof(the_line),file1); in read_mm2_input()
81 fgets(the_line,sizeof(the_line),file1); in read_mm2_input()
98 fgets(the_line,sizeof(the_line),file1); in read_mm2_input()
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H A Drdbgf.c24 char the_line[BUFF_SIZE]; in read_bgf() local
31 while (fgets(the_line,sizeof(the_line),file1)) in read_bgf()
42 while (fgets(the_line,sizeof(the_line),file1)) in read_bgf()
44 if ((EQn(the_line,"ATOM",4)) || (EQn(the_line,"HETATM",6))) in read_bgf()
56 fgets(the_line,sizeof(the_line), file1); in read_bgf()
67 fgets(the_line,sizeof(the_line), file1); in read_bgf()
71 while (fgets(the_line,sizeof(the_line), file1)) in read_bgf()
78 the_line[80] = '\0'; in read_bgf()
101 while (fgets(the_line,sizeof(the_line), file1)) in read_bgf()
103 if (EQn(the_line,"END",3)) in read_bgf()
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H A Drdcadpac.c33 while (fgets(the_line,sizeof(the_line), file1) != NULL) in read_cadpac()
48 fgets(the_line,sizeof(the_line),file1); in read_cadpac()
49 fgets(the_line,sizeof(the_line),file1); in read_cadpac()
54 fgets(the_line,sizeof(the_line),file1); in read_cadpac()
61 fgets(the_line,sizeof(the_line),file1); in read_cadpac()
62 fgets(the_line,sizeof(the_line),file1); in read_cadpac()
68 fgets(the_line,sizeof(the_line),file1); in read_cadpac()
84 fgets(the_line,sizeof(the_line),file1); in read_cadpac()
87 fgets(the_line,sizeof(the_line),file1); in read_cadpac()
92 fgets(the_line,sizeof(the_line),file1); in read_cadpac()
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H A Drdmdl.c40 fgets(the_line,sizeof(the_line),file1); in read_mdl()
47 fgets(the_line,sizeof(the_line),file1); in read_mdl()
49 fgets(the_line,sizeof(the_line),file1); in read_mdl()
62 fgets(the_line,sizeof(the_line),file1); in read_mdl()
80 fgets(the_line,sizeof(the_line),file1); in read_mdl()
82 the_line[3] = '\0'; in read_mdl()
97 fgets(the_line,sizeof(the_line),file1); in read_mdl()
111 fgets(the_line,sizeof(the_line),file1); in read_mdl()
127 fgets(the_line,sizeof(the_line),file1); in read_mdl()
129 if ((strstr(the_line,"END")) || (strstr(the_line,"$$$"))) in read_mdl()
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H A Drdgamout.c39 while (fgets(the_line,sizeof(the_line), file1) != NULL) in read_gamess_output()
46 fgets(the_line,sizeof(the_line), file1); in read_gamess_output()
47 fgets(the_line,sizeof(the_line), file1); in read_gamess_output()
52 if (fgets(the_line,sizeof(the_line), file1) != NULL) in read_gamess_output()
64 while (fgets(the_line,sizeof(the_line), file1) != NULL) in read_gamess_output()
72 fgets(the_line,sizeof(the_line), file1); in read_gamess_output()
73 fgets(the_line,sizeof(the_line), file1); in read_gamess_output()
76 if (fgets(the_line,sizeof(the_line), file1) != NULL) in read_gamess_output()
88 fgets(the_line,sizeof(the_line), file1); in read_gamess_output()
90 fgets(the_line,sizeof(the_line), file1); in read_gamess_output()
[all …]
H A Drdpsgvin.c28 char the_line[BUFF_SIZE]; in read_psgvb_input() local
50 while (fgets(the_line,sizeof(the_line), file1) != NULL) in read_psgvb_input()
53 printf("%d -> %s\n",++iline,the_line); in read_psgvb_input()
55 if (count_tokens(the_line,PSGVB_DELIMS) == 0) in read_psgvb_input()
66 while ( fgets(the_line,sizeof(the_line), file1) != NULL) in read_psgvb_input()
71 if (the_line[0] == '$' || the_line[0] == '&') in read_psgvb_input()
96 while (fgets(the_line,sizeof(the_line), file1) != NULL) in read_psgvb_input()
99 printf("%d -> %s",sym_count,the_line); in read_psgvb_input()
101 if (the_line[0] == '$' || the_line[0] == '&') in read_psgvb_input()
104 tokens = count_tokens(the_line,PSGVB_DELIMS); in read_psgvb_input()
[all …]
H A Drdpsgout.c26 char the_line[BUFF_SIZE]; in read_psgvb_output() local
34 while (fgets(the_line,sizeof(the_line), file1) != NULL) in read_psgvb_output()
38 for (sp=the_line; *sp; sp++) in read_psgvb_output()
45 if (strstr(the_line,"SCFE")) in read_psgvb_output()
53 printf(" -> %s\n",the_line); in read_psgvb_output()
56 fgets(the_line,sizeof(the_line), file1); in read_psgvb_output()
60 while (fgets(the_line,sizeof(the_line), file1) != NULL) in read_psgvb_output()
70 printf("(done)-> %s\n",the_line); in read_psgvb_output()
93 fgets(the_line,sizeof(the_line), file1); in read_psgvb_output()
96 printf("%d -> %s\n",i,the_line); in read_psgvb_output()
[all …]
H A Drdgzmat.c25 char the_line[BUFF_SIZE]; in read_gau_zmatrix() local
40 while (fgets(the_line,sizeof(the_line), file1) != NULL) in read_gau_zmatrix()
42 if (the_line[0] == '#') in read_gau_zmatrix()
45 while (fgets(the_line,sizeof(the_line), file1) != NULL) in read_gau_zmatrix()
47 if (is_blank_line(the_line)) in read_gau_zmatrix()
54 while (fgets(the_line,sizeof(the_line), file1) != NULL) in read_gau_zmatrix()
56 if (is_blank_line(the_line)) in read_gau_zmatrix()
74 while ((fgets(the_line,sizeof(the_line), file1) != NULL)) in read_gau_zmatrix()
80 while (fgets(the_line,sizeof(the_line), file1) != NULL) in read_gau_zmatrix()
82 if (count_tokens(the_line," =\t\n") == 2) in read_gau_zmatrix()
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H A Drdg96.c36 res = fgets(the_line,nsz,f); in gline()
38 res = fgets(the_line,nsz,f); in gline()
49 char the_line[BUFF_SIZE]; in cnt_atms() local
53 res = gline(the_line,BUFF_SIZE,f); in cnt_atms()
57 res = gline(the_line,BUFF_SIZE,f); in cnt_atms()
65 char the_line[BUFF_SIZE]; in rd_sco_gr96() local
75 res = gline(the_line,BUFF_SIZE,file1); in rd_sco_gr96()
83 if (strcmp(the_line,titstr) ==0){ in rd_sco_gr96()
94 strncpy(Title,the_line,200); in rd_sco_gr96()
96 res = gline(the_line,BUFF_SIZE,file1); in rd_sco_gr96()
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H A Drdhin.c24 char the_line[300]; in read_hin() local
32 while (strstr(the_line,"mol") == NULL) in read_hin()
33 fgets(the_line,sizeof(the_line),file1); in read_hin()
35 if (strstr(the_line,"mol ") != NULL) in read_hin()
42 fgets(the_line,sizeof(the_line),file1); in read_hin()
43 if (strstr(the_line,"atom")) in read_hin()
54 strcpy(the_line,""); in read_hin()
57 fgets(the_line,sizeof(the_line),file1); in read_hin()
58 if (strstr(the_line,"atom")) in read_hin()
76 get_token(temp,the_line,DELIMS,j); in read_hin()
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H A Drdspmm.c26 char the_line[BUFF_SIZE]; in read_spartan_mol_mech() local
34 while ((fgets(the_line,sizeof(the_line), file1) != NULL) && (i < 2)) in read_spartan_mol_mech()
36 if (strstr(the_line,"Cartesian")) in read_spartan_mol_mech()
45 fgets(the_line,sizeof(the_line), file1); in read_spartan_mol_mech()
51 fgets(the_line,sizeof(the_line), file1); in read_spartan_mol_mech()
52 tokens = count_tokens(the_line," \n\t"); in read_spartan_mol_mech()
60 fgets(the_line,sizeof(the_line), file1); in read_spartan_mol_mech()
64 while ((fgets(the_line,sizeof(the_line), file1) != NULL) && (!done)) in read_spartan_mol_mech()
66 if (strstr(the_line,"Minimization complete")) in read_spartan_mol_mech()
68 fgets(the_line,sizeof(the_line), file1); in read_spartan_mol_mech()
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H A Drdinsite.c24 char the_line[300]; in read_biosym_car() local
32 while ((fgets(the_line,sizeof(the_line),file1) != NULL) && (!done)) in read_biosym_car()
34 if (strstr(the_line,"PBC")) in read_biosym_car()
37 strcpy(pbc_line,the_line); in read_biosym_car()
45 fgets(the_line,sizeof(the_line),file1); in read_biosym_car()
48 the_line[0] = '\0'; in read_biosym_car()
49 while (strstr(the_line,"end") == NULL) in read_biosym_car()
51 fgets(the_line,sizeof(the_line),file1); in read_biosym_car()
64 fgets(the_line,sizeof(the_line), file1); in read_biosym_car()
72 fgets(the_line,sizeof(the_line),file1); in read_biosym_car()
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H A Drdsybmol.c24 char the_line[BUFF_SIZE]; in read_sybyl_mol() local
30 fgets(the_line,sizeof(the_line), file1); in read_sybyl_mol()
31 sscanf(the_line,"%d",&Atoms); in read_sybyl_mol()
39 fgets(the_line,sizeof(the_line), file1); in read_sybyl_mol()
40 sscanf(the_line,"%*d %s %lf %lf", in read_sybyl_mol()
44 my_strncpy(temp2,&the_line[26],9); in read_sybyl_mol()
49 fgets(the_line,sizeof(the_line), file1); in read_sybyl_mol()
50 sscanf(the_line,"%d",&Bonds); in read_sybyl_mol()
53 fgets(the_line,sizeof(the_line), file1); in read_sybyl_mol()
54 sscanf(the_line,"%*d %d %d %d", in read_sybyl_mol()
[all …]
H A Drdspart.c26 char the_line[BUFF_SIZE]; in read_spartan() local
35 while ((fgets(the_line,sizeof(the_line), file1) != NULL) && in read_spartan()
36 (strstr(the_line,"ENDCART") == NULL)) in read_spartan()
51 fgets(the_line,sizeof(the_line),file1); in read_spartan()
54 fgets(the_line,sizeof(the_line),file1); in read_spartan()
59 while ((fgets(the_line,sizeof(the_line), file1) != NULL) && in read_spartan()
60 (strstr(the_line,"HESSIAN") == NULL)); in read_spartan()
70 fgets(the_line,sizeof(the_line),file1); in read_spartan()
76 sscanf(&the_line[k],"%s",temp1); in read_spartan()
86 while ((fgets(the_line,sizeof(the_line), file1) != NULL) && in read_spartan()
[all …]
H A Drdspsemi.c25 char the_line[BUFF_SIZE]; in read_spartan_semiempirical() local
33 while ((fgets(the_line,sizeof(the_line), file1) != NULL) && (i < 2)) in read_spartan_semiempirical()
35 if (strstr(the_line,"Cartesian")) in read_spartan_semiempirical()
42 fgets(the_line,sizeof(the_line), file1); in read_spartan_semiempirical()
48 fgets(the_line,sizeof(the_line), file1); in read_spartan_semiempirical()
49 tokens = count_tokens(the_line," \n\t"); in read_spartan_semiempirical()
57 fgets(the_line,sizeof(the_line), file1); in read_spartan_semiempirical()
58 sscanf(the_line,"%s %*d %lf %lf %lf",Type(i),&X(i),&Y(i),&Z(i)); in read_spartan_semiempirical()
60 while ((fgets(the_line,sizeof(the_line), file1) != NULL) && (!done)) in read_spartan_semiempirical()
62 if (strstr(the_line,"Heat")) in read_spartan_semiempirical()
[all …]
H A Drdshelx.c25 char the_line[BUFF_SIZE]; in read_shelx() local
33 while (fgets(the_line,sizeof(the_line), file1) != NULL) in read_shelx()
35 if (count_tokens(the_line,"\n\t ") > 0) in read_shelx()
39 sscanf(the_line,"%*s%*s%lf%lf%lf%lf%lf%lf", in read_shelx()
46 if (is_good_shelx_line(the_line)) in read_shelx()
54 while (fgets(the_line,sizeof(the_line), file1) != NULL) in read_shelx()
55 if (is_good_shelx_line(the_line)) in read_shelx()
76 int count_shelx_atoms(char *the_line) in count_shelx_atoms() argument
105 int is_good_shelx_line(char *the_line) in is_good_shelx_line() argument
112 if ((strchr(the_line,'(')) || (strchr(the_line,')'))) in is_good_shelx_line()
[all …]
H A Drdschak.c26 char the_line[BUFF_SIZE]; in read_schakal() local
34 fgets(the_line,sizeof(the_line),file1); in read_schakal()
35 sscanf(the_line,"%d",&Atoms); in read_schakal()
39 while ((fgets(the_line,sizeof(the_line), file1) != NULL) && NOTEQn(the_line,"END",3)) in read_schakal()
41 if (EQn(the_line,"CELL",4)) in read_schakal()
43 tokens = count_tokens(the_line,"\t \n"); in read_schakal()
46 sscanf(the_line,"%*s%lf%lf%lf%lf%lf%lf",&f.A,&f.B,&f.C,&f.Alpha,&f.Beta,&f.Gamma); in read_schakal()
51 if (EQn(the_line,"ATOM",4)) in read_schakal()
63 while ((fgets(the_line,sizeof(the_line), file1) != NULL) && NOTEQn(the_line,"END",3)) in read_schakal()
65 if (EQn(the_line,"ATOM",4)) in read_schakal()
[all …]
H A Drddpdb.c27 char the_line[BUFF_SIZE]; in read_dock_pdb() local
37 while ((fgets(the_line,sizeof(the_line), file1) != NULL) && NOTEQn(the_line,"TER",3)) in read_dock_pdb()
39 if (EQn(the_line,"ATOM",4)) in read_dock_pdb()
48 fgets(the_line,sizeof(the_line), file1); in read_dock_pdb()
49 sscanf(&the_line[6],"%s",temp_title); in read_dock_pdb()
52 while ((fgets(the_line,sizeof(the_line), file1) != NULL) && NOTEQn(the_line,"TER",3)) in read_dock_pdb()
54 if ((EQn(the_line,"REMARK",6)) &&(strstr(the_line,"score"))) in read_dock_pdb()
56 sscanf(the_line,"%*s %*s %*s %*s %lf",&Energy); in read_dock_pdb()
61 if (EQn(the_line,"ATOM",4)) in read_dock_pdb()
64 sscanf(the_line,"%*s%*s %*s %*s%*s %lf%lf%lf%lf%*s%s", in read_dock_pdb()
H A Drdcharmm.c25 char the_line[BUFF_SIZE]; in read_charmm() local
30 while ((fgets(the_line,sizeof(the_line), file1) != NULL) && (the_line[0] == '*')); in read_charmm()
31 sscanf(the_line,"%d",&Atoms); in read_charmm()
38 fgets(the_line,sizeof(the_line), file1); in read_charmm()
43 if (isspace(the_line[15])) in read_charmm()
45 Type(i)[0] = the_line[16]; in read_charmm()
50 Type(i)[0] = the_line[15]; in read_charmm()
51 Type(i)[1] = the_line[16]; in read_charmm()
54 sscanf(&the_line[22],"%lf",&X(i)); in read_charmm()
55 sscanf(&the_line[32],"%lf",&Y(i)); in read_charmm()
[all …]
H A Drdmm2.c27 char the_line[BUFF_SIZE]; in read_mm2() local
34 fgets(the_line,sizeof(the_line),file1); in read_mm2()
35 fgets(the_line,sizeof(the_line),file1); in read_mm2()
36 sscanf(the_line,"%lf",&strain); in read_mm2()
37 fgets(the_line,sizeof(the_line),file1); in read_mm2()
38 sscanf(the_line,"%d%d",&Atoms,&Bonds); in read_mm2()
57 fgets(the_line,sizeof(the_line),file1); in read_mm2()
58 sscanf(the_line,"%lf%lf%lf%s%lf%lf%lf%s", in read_mm2()
68 fgets(the_line,sizeof(the_line),file1); in read_mm2()
78 fgets(the_line,sizeof(the_line),file1); in read_mm2()
[all …]
H A Drddock.c33 char the_line[BUFF_SIZE]; in read_dock_database() local
40 fgets(the_line,sizeof(the_line),file1); in read_dock_database()
44 fgets(the_line,sizeof(the_line),file1); in read_dock_database()
45 my_strncpy(buffer,&the_line[0],50); in read_dock_database()
47 fgets(the_line,sizeof(the_line),file1); in read_dock_database()
48 sscanf(the_line,"%d",&Atoms); in read_dock_database()
61 fgets(the_line,sizeof(the_line), file1); in read_dock_database()
63 my_strncpy(buffer,&the_line[0],5); in read_dock_database()
66 my_strncpy(buffer,&the_line[5],5); in read_dock_database()
69 my_strncpy(buffer,&the_line[10],5); in read_dock_database()
[all …]
/dports/biology/mapm3/mapm3-3.0_1/readline/
H A Dvi_mode.c81 the_line[0] = 0;
131 vi_last_search = savestring (the_line);
132 rl_vi_dosearch (the_line, dir);
164 strcpy (the_line, h->line);
166 rl_end = strlen (the_line);
308 if (isident (the_line[rl_point]))
335 if (isident (the_line[rl_point]) && !isident (the_line[rl_point - 1]))
458 c = to_lower (the_line[rl_point]);
460 c = to_upper (the_line[rl_point]);
733 if (the_line[pos] == target)
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