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Searched refs:this_loc (Results 1 – 25 of 40) sorted by relevance

12

/dports/biology/artemis/artemis-17.0.1-11-g3e43d27e/uk/ac/sanger/artemis/editor/
H A DEvidenceViewer.java63 final Location this_loc = edit_feature.getLocation(); in EvidenceViewer() local
64 featStart = this_loc.getFirstBase(); in EvidenceViewer()
65 featEnd = this_loc.getLastBase(); in EvidenceViewer()
170 Location this_loc = this_feature.getLocation(); in paintComponent() local
172 int start = this_loc.getFirstBase(); in paintComponent()
173 int end = this_loc.getLastBase(); in paintComponent()
247 Location this_loc = this_feature.getLocation(); in mouseClicked() local
248 int start = this_loc.getFirstBase(); in mouseClicked()
249 int end = this_loc.getLastBase(); in mouseClicked()
/dports/misc/vxl/vxl-3.3.2/contrib/brl/bseg/bvpl/kernels/
H A Dbvpl_taylor_basis_factory.cxx46 vgl_point_3d<float> this_loc; in create_canonical() local
48 ifs >> this_loc; in create_canonical()
50 canonical_kernel_.emplace_back(this_loc, dispatch(weight)); in create_canonical()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/edit/
H A Dcds_fix.cpp733 CConstRef<CSeq_loc> this_loc = it.GetRangeAsSeq_loc(); in TruncateSeqLoc() local
736 new_loc->Add(*this_loc); in TruncateSeqLoc()
739 new_loc->Assign(*this_loc); in TruncateSeqLoc()
751 if (this_loc->IsSetStrand() && this_loc->GetStrand() == eNa_strand_minus) { in TruncateSeqLoc()
759 partial_loc->SetId(*this_loc->GetId()); in TruncateSeqLoc()
760 if (this_loc->IsSetStrand()) { in TruncateSeqLoc()
761 partial_loc->SetStrand(this_loc->GetStrand()); in TruncateSeqLoc()
910 new_loc->Add(*this_loc); in ExtendCDSToStopCodon()
913 new_loc->Assign(*this_loc); in ExtendCDSToStopCodon()
919 CConstRef<CSeq_loc> this_loc = it.GetRangeAsSeq_loc(); in ExtendCDSToStopCodon() local
[all …]
H A Dfeature_propagate.cpp789 CConstRef<CSeq_loc> this_loc = it.GetRangeAsSeq_loc(); in x_ExtendToStopCodon() local
791 new_loc->Add(*this_loc); in x_ExtendToStopCodon()
794 new_loc->Assign(*this_loc); in x_ExtendToStopCodon()
800 CConstRef<CSeq_loc> this_loc = it.GetRangeAsSeq_loc(); in x_ExtendToStopCodon() local
801 const TSeqPos this_start = this_loc->GetStart(eExtreme_Positional); in x_ExtendToStopCodon()
802 const TSeqPos this_stop = this_loc->GetStop(eExtreme_Positional); in x_ExtendToStopCodon()
804 last_interval->SetInt().SetId().Assign(*(this_loc->GetId())); in x_ExtendToStopCodon()
805 if (this_loc->IsSetStrand() && this_loc->GetStrand() == eNa_strand_minus) { in x_ExtendToStopCodon()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/edit/
H A Dcds_fix.cpp733 CConstRef<CSeq_loc> this_loc = it.GetRangeAsSeq_loc(); in TruncateSeqLoc() local
736 new_loc->Add(*this_loc); in TruncateSeqLoc()
739 new_loc->Assign(*this_loc); in TruncateSeqLoc()
751 if (this_loc->IsSetStrand() && this_loc->GetStrand() == eNa_strand_minus) { in TruncateSeqLoc()
759 partial_loc->SetId(*this_loc->GetId()); in TruncateSeqLoc()
760 if (this_loc->IsSetStrand()) { in TruncateSeqLoc()
761 partial_loc->SetStrand(this_loc->GetStrand()); in TruncateSeqLoc()
910 new_loc->Add(*this_loc); in ExtendCDSToStopCodon()
913 new_loc->Assign(*this_loc); in ExtendCDSToStopCodon()
919 CConstRef<CSeq_loc> this_loc = it.GetRangeAsSeq_loc(); in ExtendCDSToStopCodon() local
[all …]
H A Dfeature_propagate.cpp789 CConstRef<CSeq_loc> this_loc = it.GetRangeAsSeq_loc(); in x_ExtendToStopCodon() local
791 new_loc->Add(*this_loc); in x_ExtendToStopCodon()
794 new_loc->Assign(*this_loc); in x_ExtendToStopCodon()
800 CConstRef<CSeq_loc> this_loc = it.GetRangeAsSeq_loc(); in x_ExtendToStopCodon() local
801 const TSeqPos this_start = this_loc->GetStart(eExtreme_Positional); in x_ExtendToStopCodon()
802 const TSeqPos this_stop = this_loc->GetStop(eExtreme_Positional); in x_ExtendToStopCodon()
804 last_interval->SetInt().SetId().Assign(*(this_loc->GetId())); in x_ExtendToStopCodon()
805 if (this_loc->IsSetStrand() && this_loc->GetStrand() == eNa_strand_minus) { in x_ExtendToStopCodon()
/dports/misc/vxl/vxl-3.3.2/contrib/brl/bseg/boxm2/cpp/algo/
H A Dboxm2_apply_filter_function.hxx46 vgl_point_3d<float> this_loc; in boxm2_apply_filter_function() local
48 ifs >> this_loc; in boxm2_apply_filter_function()
51 float x = this_loc.x(), y = this_loc.y(), z = this_loc.z(); in boxm2_apply_filter_function()
H A Dboxm2_compute_derivative_function.cxx249 vgl_point_3d<float> this_loc; in load_kernel() local
251 ifs >> this_loc; in load_kernel()
255 …filter.emplace_back( vgl_point_3d<int>(int(this_loc.x()),int(this_loc.y()),int(this_loc.z())), wei… in load_kernel()
257 std::cout << this_loc << " weight: " << weight << std::endl; in load_kernel()
/dports/biology/ncbi-toolkit/ncbi/api/
H A Dasn2ff4.c942 SeqLocPtr this_loc; in group_FlatLoc() local
955 this_loc && *is_okPt; this_loc = this_loc -> next){ in group_FlatLoc()
956 if ( FlatVirtLoc(bsp, this_loc)) { in group_FlatLoc()
957 if ( this_loc != location && this_loc -> next){ in group_FlatLoc()
972 switch ( this_loc -> choice ){ in group_FlatLoc()
974 if ( this_loc != location && this_loc -> next){ in group_FlatLoc()
989 if (FlatVirtLoc(bsp, this_loc)){ in group_FlatLoc()
990 if ( this_loc != location && this_loc -> next){ in group_FlatLoc()
1011 && ! FlatNullAhead(bsp, this_loc)){ in group_FlatLoc()
1040 this_loc -> next = NULL; in group_FlatLoc()
[all …]
/dports/devel/hpx/hpx-1.2.1/tests/performance/network/osu/
H A Dosu_coll.hpp93 hpx::id_type this_loc = localities[0]; in distribute_component() local
107 p.apply(hpx::launch::async, this_loc, type, num_components); in distribute_component()
143 value_type(this_loc.get_gid(), type) in distribute_component()
/dports/emulators/qemu42/qemu-4.2.1/linux-user/aarch64/
H A Dsignal.c393 int this_loc = l->total_size; in alloc_sigframe_space() local
398 } else if (this_size + this_loc > std_size) { in alloc_sigframe_space()
401 l->extra_ofs = this_loc; in alloc_sigframe_space()
409 l->extra_base = this_loc = l->total_size; in alloc_sigframe_space()
414 return this_loc; in alloc_sigframe_space()
/dports/emulators/qemu/qemu-6.2.0/linux-user/aarch64/
H A Dsignal.c393 int this_loc = l->total_size;
398 } else if (this_size + this_loc > std_size) {
401 l->extra_ofs = this_loc;
409 l->extra_base = this_loc = l->total_size;
414 return this_loc;
/dports/emulators/qemu60/qemu-6.0.0/linux-user/aarch64/
H A Dsignal.c393 int this_loc = l->total_size; in alloc_sigframe_space() local
398 } else if (this_size + this_loc > std_size) { in alloc_sigframe_space()
401 l->extra_ofs = this_loc; in alloc_sigframe_space()
409 l->extra_base = this_loc = l->total_size; in alloc_sigframe_space()
414 return this_loc; in alloc_sigframe_space()
/dports/emulators/qemu-utils/qemu-4.2.1/linux-user/aarch64/
H A Dsignal.c393 int this_loc = l->total_size; in alloc_sigframe_space() local
398 } else if (this_size + this_loc > std_size) { in alloc_sigframe_space()
401 l->extra_ofs = this_loc; in alloc_sigframe_space()
409 l->extra_base = this_loc = l->total_size; in alloc_sigframe_space()
414 return this_loc; in alloc_sigframe_space()
/dports/emulators/qemu5/qemu-5.2.0/linux-user/aarch64/
H A Dsignal.c393 int this_loc = l->total_size; in alloc_sigframe_space() local
398 } else if (this_size + this_loc > std_size) { in alloc_sigframe_space()
401 l->extra_ofs = this_loc; in alloc_sigframe_space()
409 l->extra_base = this_loc = l->total_size; in alloc_sigframe_space()
414 return this_loc; in alloc_sigframe_space()
/dports/emulators/qemu-powernv/qemu-powernv-3.0.50/linux-user/aarch64/
H A Dsignal.c393 int this_loc = l->total_size; in alloc_sigframe_space() local
398 } else if (this_size + this_loc > std_size) { in alloc_sigframe_space()
401 l->extra_ofs = this_loc; in alloc_sigframe_space()
409 l->extra_base = this_loc = l->total_size; in alloc_sigframe_space()
414 return this_loc; in alloc_sigframe_space()
/dports/emulators/qemu-devel/qemu-de8ed1055c2ce18c95f597eb10df360dcb534f99/linux-user/aarch64/
H A Dsignal.c394 int this_loc = l->total_size; in alloc_sigframe_space() local
399 } else if (this_size + this_loc > std_size) { in alloc_sigframe_space()
402 l->extra_ofs = this_loc; in alloc_sigframe_space()
410 l->extra_base = this_loc = l->total_size; in alloc_sigframe_space()
415 return this_loc; in alloc_sigframe_space()
/dports/emulators/qemu-guest-agent/qemu-5.0.1/linux-user/aarch64/
H A Dsignal.c393 int this_loc = l->total_size;
398 } else if (this_size + this_loc > std_size) {
401 l->extra_ofs = this_loc;
409 l->extra_base = this_loc = l->total_size;
414 return this_loc;
/dports/emulators/qemu-cheri/qemu-0a323821042c36e21ea80e58b9545dfc3b0cb8ef/linux-user/aarch64/
H A Dsignal.c393 int this_loc = l->total_size; in alloc_sigframe_space() local
398 } else if (this_size + this_loc > std_size) { in alloc_sigframe_space()
401 l->extra_ofs = this_loc; in alloc_sigframe_space()
409 l->extra_base = this_loc = l->total_size; in alloc_sigframe_space()
414 return this_loc; in alloc_sigframe_space()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/format/
H A Dflat_seqloc.cpp386 const CSeq_loc& this_loc = it.GetEmbeddingSeq_loc(); in x_Add() local
399 if( ( this_loc.IsInt() || this_loc.IsPnt() ) && in x_Add()
411 … if (!x_Add(this_loc, oss, ctx, type, show_comp, show_all_accns, false, suppress_accession)) { in x_Add()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/format/
H A Dflat_seqloc.cpp386 const CSeq_loc& this_loc = it.GetEmbeddingSeq_loc(); in x_Add() local
399 if( ( this_loc.IsInt() || this_loc.IsPnt() ) && in x_Add()
411 … if (!x_Add(this_loc, oss, ctx, type, show_comp, show_all_accns, false, suppress_accession)) { in x_Add()
/dports/graphics/gmt/gmt-6.3.0/src/
H A Dfilter1d.c143 double *this_loc; member
585 F->last_loc[j] = F->this_loc[j] = temp; in filter1d_get_robust_estimates()
588 for (i = 0; i < n; ++i) F->work[j][i] = fabs (F->work[j][i] - F->this_loc[j]); in filter1d_get_robust_estimates()
724 data_sum[i_col] = (F->highpass) ? F->data[i_col][k] - F->this_loc[i_col] : F->this_loc[i_col]; in filter1d_do_the_filter()
746 med = F->this_loc[i_col]; in filter1d_do_the_filter()
826 F->this_loc = gmt_M_memory (GMT, NULL, F->n_cols, double); in filter1d_allocate_space()
850 gmt_M_free (GMT, F->this_loc); in filter1d_free_space()
/dports/graphics/mesa-devel/mesa-22.0-branchpoint-2059-ge8a63cf61ec/src/gallium/auxiliary/gallivm/
H A Dlp_bld_nir_aos.c89 unsigned this_loc = var->data.driver_location; in init_var_slots() local
91 bld->outputs[this_loc] = lp_build_alloca(bld_base->base.gallivm, in init_var_slots()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/misc/hgvs/
H A Dhgvs_parser.hpp810 TSeqPos x_GetInstLength(const CVariation_inst& inst, const CSeq_loc& this_loc);
812 string x_GetInstData(const CVariation_inst& inst, const CSeq_loc& this_loc);
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/validator/
H A Dsingle_feat_validator.cpp917 CConstRef<CSeq_loc> this_loc = loc_it.GetRangeAsSeq_loc(); in x_CalculateLocationGaps() local
918 CSeqVector vec = GetSequenceFromLoc(*this_loc, bsh.GetScope()); in x_CalculateLocationGaps()
931 ph = bsh.GetScope().GetBioseqHandle(*this_loc); in x_CalculateLocationGaps()
934 CGapCache gap_cache(*this_loc, ph); in x_CalculateLocationGaps()
1074 CConstRef<CSeq_loc> this_loc = loc_it.GetRangeAsSeq_loc(); in x_IsMostlyNs() local
1075 CSeqVector vec = GetSequenceFromLoc(*this_loc, bsh.GetScope()); in x_IsMostlyNs()
1088 ph = bsh.GetScope().GetBioseqHandle(*this_loc); in x_IsMostlyNs()
1090 TSeqPos offset = this_loc->GetStart(eExtreme_Positional); in x_IsMostlyNs()

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