/dports/biology/artemis/artemis-17.0.1-11-g3e43d27e/uk/ac/sanger/artemis/editor/ |
H A D | EvidenceViewer.java | 63 final Location this_loc = edit_feature.getLocation(); in EvidenceViewer() local 64 featStart = this_loc.getFirstBase(); in EvidenceViewer() 65 featEnd = this_loc.getLastBase(); in EvidenceViewer() 170 Location this_loc = this_feature.getLocation(); in paintComponent() local 172 int start = this_loc.getFirstBase(); in paintComponent() 173 int end = this_loc.getLastBase(); in paintComponent() 247 Location this_loc = this_feature.getLocation(); in mouseClicked() local 248 int start = this_loc.getFirstBase(); in mouseClicked() 249 int end = this_loc.getLastBase(); in mouseClicked()
|
/dports/misc/vxl/vxl-3.3.2/contrib/brl/bseg/bvpl/kernels/ |
H A D | bvpl_taylor_basis_factory.cxx | 46 vgl_point_3d<float> this_loc; in create_canonical() local 48 ifs >> this_loc; in create_canonical() 50 canonical_kernel_.emplace_back(this_loc, dispatch(weight)); in create_canonical()
|
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/edit/ |
H A D | cds_fix.cpp | 733 CConstRef<CSeq_loc> this_loc = it.GetRangeAsSeq_loc(); in TruncateSeqLoc() local 736 new_loc->Add(*this_loc); in TruncateSeqLoc() 739 new_loc->Assign(*this_loc); in TruncateSeqLoc() 751 if (this_loc->IsSetStrand() && this_loc->GetStrand() == eNa_strand_minus) { in TruncateSeqLoc() 759 partial_loc->SetId(*this_loc->GetId()); in TruncateSeqLoc() 760 if (this_loc->IsSetStrand()) { in TruncateSeqLoc() 761 partial_loc->SetStrand(this_loc->GetStrand()); in TruncateSeqLoc() 910 new_loc->Add(*this_loc); in ExtendCDSToStopCodon() 913 new_loc->Assign(*this_loc); in ExtendCDSToStopCodon() 919 CConstRef<CSeq_loc> this_loc = it.GetRangeAsSeq_loc(); in ExtendCDSToStopCodon() local [all …]
|
H A D | feature_propagate.cpp | 789 CConstRef<CSeq_loc> this_loc = it.GetRangeAsSeq_loc(); in x_ExtendToStopCodon() local 791 new_loc->Add(*this_loc); in x_ExtendToStopCodon() 794 new_loc->Assign(*this_loc); in x_ExtendToStopCodon() 800 CConstRef<CSeq_loc> this_loc = it.GetRangeAsSeq_loc(); in x_ExtendToStopCodon() local 801 const TSeqPos this_start = this_loc->GetStart(eExtreme_Positional); in x_ExtendToStopCodon() 802 const TSeqPos this_stop = this_loc->GetStop(eExtreme_Positional); in x_ExtendToStopCodon() 804 last_interval->SetInt().SetId().Assign(*(this_loc->GetId())); in x_ExtendToStopCodon() 805 if (this_loc->IsSetStrand() && this_loc->GetStrand() == eNa_strand_minus) { in x_ExtendToStopCodon()
|
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/edit/ |
H A D | cds_fix.cpp | 733 CConstRef<CSeq_loc> this_loc = it.GetRangeAsSeq_loc(); in TruncateSeqLoc() local 736 new_loc->Add(*this_loc); in TruncateSeqLoc() 739 new_loc->Assign(*this_loc); in TruncateSeqLoc() 751 if (this_loc->IsSetStrand() && this_loc->GetStrand() == eNa_strand_minus) { in TruncateSeqLoc() 759 partial_loc->SetId(*this_loc->GetId()); in TruncateSeqLoc() 760 if (this_loc->IsSetStrand()) { in TruncateSeqLoc() 761 partial_loc->SetStrand(this_loc->GetStrand()); in TruncateSeqLoc() 910 new_loc->Add(*this_loc); in ExtendCDSToStopCodon() 913 new_loc->Assign(*this_loc); in ExtendCDSToStopCodon() 919 CConstRef<CSeq_loc> this_loc = it.GetRangeAsSeq_loc(); in ExtendCDSToStopCodon() local [all …]
|
H A D | feature_propagate.cpp | 789 CConstRef<CSeq_loc> this_loc = it.GetRangeAsSeq_loc(); in x_ExtendToStopCodon() local 791 new_loc->Add(*this_loc); in x_ExtendToStopCodon() 794 new_loc->Assign(*this_loc); in x_ExtendToStopCodon() 800 CConstRef<CSeq_loc> this_loc = it.GetRangeAsSeq_loc(); in x_ExtendToStopCodon() local 801 const TSeqPos this_start = this_loc->GetStart(eExtreme_Positional); in x_ExtendToStopCodon() 802 const TSeqPos this_stop = this_loc->GetStop(eExtreme_Positional); in x_ExtendToStopCodon() 804 last_interval->SetInt().SetId().Assign(*(this_loc->GetId())); in x_ExtendToStopCodon() 805 if (this_loc->IsSetStrand() && this_loc->GetStrand() == eNa_strand_minus) { in x_ExtendToStopCodon()
|
/dports/misc/vxl/vxl-3.3.2/contrib/brl/bseg/boxm2/cpp/algo/ |
H A D | boxm2_apply_filter_function.hxx | 46 vgl_point_3d<float> this_loc; in boxm2_apply_filter_function() local 48 ifs >> this_loc; in boxm2_apply_filter_function() 51 float x = this_loc.x(), y = this_loc.y(), z = this_loc.z(); in boxm2_apply_filter_function()
|
H A D | boxm2_compute_derivative_function.cxx | 249 vgl_point_3d<float> this_loc; in load_kernel() local 251 ifs >> this_loc; in load_kernel() 255 …filter.emplace_back( vgl_point_3d<int>(int(this_loc.x()),int(this_loc.y()),int(this_loc.z())), wei… in load_kernel() 257 std::cout << this_loc << " weight: " << weight << std::endl; in load_kernel()
|
/dports/biology/ncbi-toolkit/ncbi/api/ |
H A D | asn2ff4.c | 942 SeqLocPtr this_loc; in group_FlatLoc() local 955 this_loc && *is_okPt; this_loc = this_loc -> next){ in group_FlatLoc() 956 if ( FlatVirtLoc(bsp, this_loc)) { in group_FlatLoc() 957 if ( this_loc != location && this_loc -> next){ in group_FlatLoc() 972 switch ( this_loc -> choice ){ in group_FlatLoc() 974 if ( this_loc != location && this_loc -> next){ in group_FlatLoc() 989 if (FlatVirtLoc(bsp, this_loc)){ in group_FlatLoc() 990 if ( this_loc != location && this_loc -> next){ in group_FlatLoc() 1011 && ! FlatNullAhead(bsp, this_loc)){ in group_FlatLoc() 1040 this_loc -> next = NULL; in group_FlatLoc() [all …]
|
/dports/devel/hpx/hpx-1.2.1/tests/performance/network/osu/ |
H A D | osu_coll.hpp | 93 hpx::id_type this_loc = localities[0]; in distribute_component() local 107 p.apply(hpx::launch::async, this_loc, type, num_components); in distribute_component() 143 value_type(this_loc.get_gid(), type) in distribute_component()
|
/dports/emulators/qemu42/qemu-4.2.1/linux-user/aarch64/ |
H A D | signal.c | 393 int this_loc = l->total_size; in alloc_sigframe_space() local 398 } else if (this_size + this_loc > std_size) { in alloc_sigframe_space() 401 l->extra_ofs = this_loc; in alloc_sigframe_space() 409 l->extra_base = this_loc = l->total_size; in alloc_sigframe_space() 414 return this_loc; in alloc_sigframe_space()
|
/dports/emulators/qemu/qemu-6.2.0/linux-user/aarch64/ |
H A D | signal.c | 393 int this_loc = l->total_size; 398 } else if (this_size + this_loc > std_size) { 401 l->extra_ofs = this_loc; 409 l->extra_base = this_loc = l->total_size; 414 return this_loc;
|
/dports/emulators/qemu60/qemu-6.0.0/linux-user/aarch64/ |
H A D | signal.c | 393 int this_loc = l->total_size; in alloc_sigframe_space() local 398 } else if (this_size + this_loc > std_size) { in alloc_sigframe_space() 401 l->extra_ofs = this_loc; in alloc_sigframe_space() 409 l->extra_base = this_loc = l->total_size; in alloc_sigframe_space() 414 return this_loc; in alloc_sigframe_space()
|
/dports/emulators/qemu-utils/qemu-4.2.1/linux-user/aarch64/ |
H A D | signal.c | 393 int this_loc = l->total_size; in alloc_sigframe_space() local 398 } else if (this_size + this_loc > std_size) { in alloc_sigframe_space() 401 l->extra_ofs = this_loc; in alloc_sigframe_space() 409 l->extra_base = this_loc = l->total_size; in alloc_sigframe_space() 414 return this_loc; in alloc_sigframe_space()
|
/dports/emulators/qemu5/qemu-5.2.0/linux-user/aarch64/ |
H A D | signal.c | 393 int this_loc = l->total_size; in alloc_sigframe_space() local 398 } else if (this_size + this_loc > std_size) { in alloc_sigframe_space() 401 l->extra_ofs = this_loc; in alloc_sigframe_space() 409 l->extra_base = this_loc = l->total_size; in alloc_sigframe_space() 414 return this_loc; in alloc_sigframe_space()
|
/dports/emulators/qemu-powernv/qemu-powernv-3.0.50/linux-user/aarch64/ |
H A D | signal.c | 393 int this_loc = l->total_size; in alloc_sigframe_space() local 398 } else if (this_size + this_loc > std_size) { in alloc_sigframe_space() 401 l->extra_ofs = this_loc; in alloc_sigframe_space() 409 l->extra_base = this_loc = l->total_size; in alloc_sigframe_space() 414 return this_loc; in alloc_sigframe_space()
|
/dports/emulators/qemu-devel/qemu-de8ed1055c2ce18c95f597eb10df360dcb534f99/linux-user/aarch64/ |
H A D | signal.c | 394 int this_loc = l->total_size; in alloc_sigframe_space() local 399 } else if (this_size + this_loc > std_size) { in alloc_sigframe_space() 402 l->extra_ofs = this_loc; in alloc_sigframe_space() 410 l->extra_base = this_loc = l->total_size; in alloc_sigframe_space() 415 return this_loc; in alloc_sigframe_space()
|
/dports/emulators/qemu-guest-agent/qemu-5.0.1/linux-user/aarch64/ |
H A D | signal.c | 393 int this_loc = l->total_size; 398 } else if (this_size + this_loc > std_size) { 401 l->extra_ofs = this_loc; 409 l->extra_base = this_loc = l->total_size; 414 return this_loc;
|
/dports/emulators/qemu-cheri/qemu-0a323821042c36e21ea80e58b9545dfc3b0cb8ef/linux-user/aarch64/ |
H A D | signal.c | 393 int this_loc = l->total_size; in alloc_sigframe_space() local 398 } else if (this_size + this_loc > std_size) { in alloc_sigframe_space() 401 l->extra_ofs = this_loc; in alloc_sigframe_space() 409 l->extra_base = this_loc = l->total_size; in alloc_sigframe_space() 414 return this_loc; in alloc_sigframe_space()
|
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/format/ |
H A D | flat_seqloc.cpp | 386 const CSeq_loc& this_loc = it.GetEmbeddingSeq_loc(); in x_Add() local 399 if( ( this_loc.IsInt() || this_loc.IsPnt() ) && in x_Add() 411 … if (!x_Add(this_loc, oss, ctx, type, show_comp, show_all_accns, false, suppress_accession)) { in x_Add()
|
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/format/ |
H A D | flat_seqloc.cpp | 386 const CSeq_loc& this_loc = it.GetEmbeddingSeq_loc(); in x_Add() local 399 if( ( this_loc.IsInt() || this_loc.IsPnt() ) && in x_Add() 411 … if (!x_Add(this_loc, oss, ctx, type, show_comp, show_all_accns, false, suppress_accession)) { in x_Add()
|
/dports/graphics/gmt/gmt-6.3.0/src/ |
H A D | filter1d.c | 143 double *this_loc; member 585 F->last_loc[j] = F->this_loc[j] = temp; in filter1d_get_robust_estimates() 588 for (i = 0; i < n; ++i) F->work[j][i] = fabs (F->work[j][i] - F->this_loc[j]); in filter1d_get_robust_estimates() 724 data_sum[i_col] = (F->highpass) ? F->data[i_col][k] - F->this_loc[i_col] : F->this_loc[i_col]; in filter1d_do_the_filter() 746 med = F->this_loc[i_col]; in filter1d_do_the_filter() 826 F->this_loc = gmt_M_memory (GMT, NULL, F->n_cols, double); in filter1d_allocate_space() 850 gmt_M_free (GMT, F->this_loc); in filter1d_free_space()
|
/dports/graphics/mesa-devel/mesa-22.0-branchpoint-2059-ge8a63cf61ec/src/gallium/auxiliary/gallivm/ |
H A D | lp_bld_nir_aos.c | 89 unsigned this_loc = var->data.driver_location; in init_var_slots() local 91 bld->outputs[this_loc] = lp_build_alloca(bld_base->base.gallivm, in init_var_slots()
|
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/misc/hgvs/ |
H A D | hgvs_parser.hpp | 810 TSeqPos x_GetInstLength(const CVariation_inst& inst, const CSeq_loc& this_loc); 812 string x_GetInstData(const CVariation_inst& inst, const CSeq_loc& this_loc);
|
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/validator/ |
H A D | single_feat_validator.cpp | 917 CConstRef<CSeq_loc> this_loc = loc_it.GetRangeAsSeq_loc(); in x_CalculateLocationGaps() local 918 CSeqVector vec = GetSequenceFromLoc(*this_loc, bsh.GetScope()); in x_CalculateLocationGaps() 931 ph = bsh.GetScope().GetBioseqHandle(*this_loc); in x_CalculateLocationGaps() 934 CGapCache gap_cache(*this_loc, ph); in x_CalculateLocationGaps() 1074 CConstRef<CSeq_loc> this_loc = loc_it.GetRangeAsSeq_loc(); in x_IsMostlyNs() local 1075 CSeqVector vec = GetSequenceFromLoc(*this_loc, bsh.GetScope()); in x_IsMostlyNs() 1088 ph = bsh.GetScope().GetBioseqHandle(*this_loc); in x_IsMostlyNs() 1090 TSeqPos offset = this_loc->GetStart(eExtreme_Positional); in x_IsMostlyNs()
|