Searched refs:tmp_indel_penalty (Results 1 – 2 of 2) sorted by relevance
85 int tmp_indel_penalty; member
273 … explain_context -> tmp_indel_penalty += ( tested_event -> event_type == CHRO_EVENT_TYPE_INDEL ); in search_events_to_front()286 … explain_context -> tmp_indel_penalty -= ( tested_event -> event_type == CHRO_EVENT_TYPE_INDEL ); in search_events_to_front()315 …t_indel_penalty < explain_context-> tmp_total_matched_bases - explain_context -> tmp_indel_penalty) in new_explain_try_replace()326 explain_context -> best_indel_penalty = explain_context -> tmp_indel_penalty; in new_explain_try_replace()328 …_indel_penalty == explain_context-> tmp_total_matched_bases - explain_context -> tmp_indel_penalty) in new_explain_try_replace()333 explain_context -> best_indel_penalty = explain_context -> tmp_indel_penalty; in new_explain_try_replace()718 … explain_context -> tmp_indel_penalty += ( tested_event -> event_type == CHRO_EVENT_TYPE_INDEL ); in search_events_to_back()729 … explain_context -> tmp_indel_penalty -= ( tested_event -> event_type == CHRO_EVENT_TYPE_INDEL ); in search_events_to_back()2654 explain_context.tmp_indel_penalty = 0; in explain_read()2721 explain_context.tmp_indel_penalty = 0; in explain_read()