| /dports/biology/diamond/diamond-2.0.13/src/lib/alp/ |
| H A D | njn_root.hpp | 65 double tol_, // absolute tolerance
80 double tol_, // absolute tolerance
94 double tol_, // absolute tolerance
106 double tol_, // absolute tolerance
125 double tol_, // absolute tolerance
138 double tol_, // absolute tolerance
150 double tol_, // absolute tolerance
159 double tol_, // absolute tolerance
197 double tol_, // absolute tolerance in newtonRaphson() argument
211 double tol_, // absolute tolerance in bisection() argument
[all …]
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| /dports/biology/mmseqs2/MMseqs2-13-45111/lib/alp/ |
| H A D | njn_root.hpp | 65 double tol_, // absolute tolerance
80 double tol_, // absolute tolerance
94 double tol_, // absolute tolerance
106 double tol_, // absolute tolerance
125 double tol_, // absolute tolerance
138 double tol_, // absolute tolerance
150 double tol_, // absolute tolerance
159 double tol_, // absolute tolerance
197 double tol_, // absolute tolerance in newtonRaphson() argument
211 double tol_, // absolute tolerance in bisection() argument
[all …]
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/gumbel_params/ |
| H A D | njn_root.hpp | 70 double tol_, // absolute tolerance
85 double tol_, // absolute tolerance
99 double tol_, // absolute tolerance
111 double tol_, // absolute tolerance
130 double tol_, // absolute tolerance
143 double tol_, // absolute tolerance
155 double tol_, // absolute tolerance
164 double tol_, // absolute tolerance
198 double tol_, // absolute tolerance in newtonRaphson() argument
212 double tol_, // absolute tolerance in bisection() argument
[all …]
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| /dports/math/stanmath/math-4.2.0/test/unit/math/ |
| H A D | relative_tolerance.hpp | 22 relative_tolerance() : tol_(1e-8), tol_min_(1e-14) {} in relative_tolerance()
29 : tol_(tol), tol_min_(std::max(tol * tol, 1e-14)) {} in relative_tolerance()
37 : tol_(tol), tol_min_(tol_min) {} in relative_tolerance()
39 double tol() const { return tol_; } in tol()
47 return relative_tolerance(tol_, tol_min); in change_tol_min()
51 return relative_tolerance(a * tol_, a * tol_min_); in operator *()
64 return std::max(tol_ * fabs(x), tol_min_); in exact()
79 return std::max(tol_ * 0.5 * (fabs(x) + fabs(y)), tol_min_); in inexact()
86 double tol_; member in stan::test::relative_tolerance
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| /dports/science/dakota/dakota-6.13.0-release-public.src-UI/packages/external/trilinos/packages/rol/src/vector/ |
| H A D | ROL_RieszVector.hpp | 88 mutable Real tol_; member in ROL::RieszPrimalVector
94 dual_ = ROL::makePtr<DualVector>(v_->clone(),op_,tol_); in initialize_dual()
95 op_->apply(*(dual_->getVector()),*v_,tol_); in initialize_dual()
104 v_(v), op_(op), tol_(tol), isDualInitialized_(false) { in RieszPrimalVector()
119 return ROL::makePtr<RieszPrimalVector>( v_->clone(), op_, tol_ ); in clone()
174 mutable Real tol_; member in ROL::RieszDualVector
180 primal_ = ROL::makePtr<PrimalVector>(v_->clone(),op_,tol_); in initialize_primal()
181 op_->applyInverse(*(primal_->getVector()),*v_,tol_); in initialize_primal()
190 v_(v), op_(op), tol_(tol), isPrimalInitialized_(false) { in RieszDualVector()
205 return ROL::makePtr<RieszDualVector>( v_->clone(), op_, tol_ ); in clone()
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| /dports/science/dakota/dakota-6.13.0-release-public.src-UI/packages/external/trilinos/packages/rol/src/utils/function_bindings/ |
| H A D | ROL_Objective_SimOpt_CheckInterfaceDef.hpp | 64 Real tol_; member in ROL::details::Objective_SimOpt_CheckInterface
69 obj_(obj), tol_(sqrt(ROL_EPSILON<Real>())) {} in Objective_SimOpt_CheckInterface()
78 return bind( &Objective_SimOpt<Real>::value, &obj_, ph::_1, tol_); in value()
82 return bind( &Objective_SimOpt<Real>::gradient_1, &obj_, ph::_1, ph::_2, cref(z), tol_); in gradient_1()
86 return bind( &Objective_SimOpt<Real>::gradient_2, &obj_, ph::_1, cref(u), ph::_2, tol_); in gradient_2()
90 return bind( &Objective_SimOpt<Real>::hessVec, &obj_, ph::_1, ph::_2, ph::_3, tol_); in hessVec_11()
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| H A D | ROL_Constraint_CheckInterface.hpp | 63 Real tol_; member in ROL::details::Constraint_CheckInterface
69 con_(con), tol_(sqrt(ROL_EPSILON<Real>())) {} in Constraint_CheckInterface()
76 return bind( &Constraint<Real>::value, &con_, ph::_1, ph::_2, tol_); in value()
81 return bind( &Constraint<Real>::applyJacobian, &con_, ph::_1, ph::_2, ph::_3, tol_); in jacobian()
89 &con_, ph::_1, ph::_2, ph::_3, tol_); in adjointJacobian()
93 …return bind( &Constraint<Real>::applyAdjointHessian, &con_, ph::_1, cref(l), ph::_2, ph::_3, tol_); in adjointHessian()
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| H A D | ROL_Objective_CheckInterface.hpp | 63 Real tol_; member in ROL::details::Objective_CheckInterface
68 obj_(obj), tol_(sqrt(ROL_EPSILON<Real>())) {} in Objective_CheckInterface()
75 return bind( &Objective<Real>::value, &obj_, ph::_1, tol_); in value()
79 return bind( &Objective<Real>::gradient, &obj_, ph::_1, ph::_2, tol_); in gradient()
83 return bind( &Objective<Real>::hessVec, &obj_, ph::_1, ph::_2, ph::_3, tol_); in hessVec()
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| /dports/science/dakota/dakota-6.13.0-release-public.src-UI/packages/external/trilinos/packages/rol/src/status/ |
| H A D | ROL_BundleStatusTest.hpp | 56 Real tol_; member in ROL::BundleStatusTest
65 tol_ = parlist.sublist("Step").sublist("Bundle").get("Epsilon Solution Tolerance", em6); in BundleStatusTest()
70 tol_(tol), max_iter_(max_iter) {} in BundleStatusTest()
76 if ( (std::max(state.aggregateGradientNorm,state.aggregateModelError) > tol_) in check()
82 …state.statusFlag = (std::max(state.aggregateGradientNorm,state.aggregateModelError) <= tol_ ? EXIT… in check()
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| /dports/math/dune-fem/dune-fem-d1c625e6d51167d0cce57de6adcef21f548a8f82/dune/fem/solver/rungekutta/ |
| H A D | timestepcontrol.hh | 303 tol_( 1e-3 ) in PIDTimeStepControl()
307 tol_ = parameters.parameter().getValue("fem.ode.pidtolerance", tol_ ); in PIDTimeStepControl()
308 errors_.resize( 3, tol_ ); in PIDTimeStepControl()
315 tol_( 1e-3 ) in PIDTimeStepControl()
319 tol_ = parameter.getValue("fem.ode.pidtolerance", tol_ ); in PIDTimeStepControl()
320 errors_.resize( 3, tol_ ); in PIDTimeStepControl()
378 if( error > tol_ ) in pidTimeStepControl()
381 const double newDt = dt * tol_ / error; in pidTimeStepControl()
391 std::pow( tol_ / errors_[ 2 ], kI ) * in pidTimeStepControl()
402 double tol_; member in DuneODE::PIDTimeStepControl
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| /dports/misc/vxl/vxl-3.3.2/contrib/brl/bbas/bsta/algo/ |
| H A D | bsta_parzen_updater.h | 46 : tol_(tol), max_samples_(max_samples) {} in bsta_parzen_updater()
51 T tol_;
76 : tol_(tol), max_samples_(max_samples), in tol_() function
82 T tol_;
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| /dports/devel/hyperscan/boost_1_75_0/boost/math/quadrature/ |
| H A D | wavelet_transforms.hpp | 19 …int max_refinements = 12) : f_{f}, psi_(grid_refinements), tol_{tol}, max_refinements_{max_refinem… in daubechies_wavelet_transform()
23 int max_refinements = 12) : f_{f}, psi_{wavelet}, tol_{tol}, max_refinements_{max_refinements} in daubechies_wavelet_transform()
35 return sqrt(abs(s))*trapezoidal(g, a, b, tol_, max_refinements_); in operator ()()
41 Real tol_; member in boost::math::quadrature::daubechies_wavelet_transform
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| /dports/devel/R-cran-BH/BH/inst/include/boost/math/quadrature/ |
| H A D | wavelet_transforms.hpp | 19 …int max_refinements = 12) : f_{f}, psi_(grid_refinements), tol_{tol}, max_refinements_{max_refinem… in daubechies_wavelet_transform()
23 int max_refinements = 12) : f_{f}, psi_{wavelet}, tol_{tol}, max_refinements_{max_refinements} in daubechies_wavelet_transform()
35 return sqrt(abs(s))*trapezoidal(g, a, b, tol_, max_refinements_); in operator ()()
41 Real tol_; member in boost::math::quadrature::daubechies_wavelet_transform
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| /dports/math/stanmath/math-4.2.0/lib/boost_1.75.0/boost/math/quadrature/ |
| H A D | wavelet_transforms.hpp | 19 …int max_refinements = 12) : f_{f}, psi_(grid_refinements), tol_{tol}, max_refinements_{max_refinem… in daubechies_wavelet_transform()
23 int max_refinements = 12) : f_{f}, psi_{wavelet}, tol_{tol}, max_refinements_{max_refinements} in daubechies_wavelet_transform()
35 return sqrt(abs(s))*trapezoidal(g, a, b, tol_, max_refinements_); in operator ()()
41 Real tol_; member in boost::math::quadrature::daubechies_wavelet_transform
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| /dports/science/py-scipy/scipy-1.7.1/scipy/_lib/boost/boost/math/quadrature/ |
| H A D | wavelet_transforms.hpp | 19 …int max_refinements = 12) : f_{f}, psi_(grid_refinements), tol_{tol}, max_refinements_{max_refinem… in daubechies_wavelet_transform()
23 int max_refinements = 12) : f_{f}, psi_{wavelet}, tol_{tol}, max_refinements_{max_refinements} in daubechies_wavelet_transform()
35 return sqrt(abs(s))*trapezoidal(g, a, b, tol_, max_refinements_); in operator ()()
41 Real tol_; member in boost::math::quadrature::daubechies_wavelet_transform
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| /dports/math/xlife++/xlifepp-sources-v2.0.1-2018-05-09/src/eigenSolvers/eigenSparse/ |
| H A D | XlifeppStatusTestResNorm.hpp | 150 tol_ = tol; in setTolerance()
154 typename NumTraits<ScalarType>::RealScalar getTolerance() {return tol_;} in getTolerance()
216 MagnitudeType tol_; member in xlifepp::StatusTestResNorm
227 : state_(_undefined), tol_(tol), quorum_(quorum), scaled_(scaled), whichNorm_(whichNorm), throwExce… in StatusTestResNorm()
271 if (res[i] < tol_) { in checkStatus()
300 << "(" << tol_; in print()
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| /dports/science/dakota/dakota-6.13.0-release-public.src-UI/packages/external/trilinos/packages/rol/adapters/pebbl/src/algorithm/ |
| H A D | ROL_StdBranchHelper_PEBBL.hpp | 64 const Real tol_; member in ROL::StdBranchHelper_PEBBL
113 : tol_(tol), method_(method) {} in StdBranchHelper_PEBBL()
116 : tol_(BH.tol_), method_(BH.method_) {} in StdBranchHelper_PEBBL()
146 if (minD > tol_) { in getMyNumFrac()
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| /dports/science/dakota/dakota-6.13.0-release-public.src-UI/packages/external/trilinos/packages/rol/adapters/teuchos/src/pebbl/ |
| H A D | ROL_TeuchosBranchHelper_PEBBL.hpp | 64 const Real tol_; member in ROL::TeuchosBranchHelper_PEBBL
112 : tol_(tol), method_(method) {} in TeuchosBranchHelper_PEBBL()
115 : tol_(BH.tol_), method_(BH.method_) {} in TeuchosBranchHelper_PEBBL()
143 if (minD > tol_) { in getMyNumFrac()
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| /dports/science/dakota/dakota-6.13.0-release-public.src-UI/packages/external/trilinos/packages/rol/src/sol/status/ |
| H A D | ROL_PH_StatusTest.hpp | 63 Real tol_; member in ROL::PH_StatusTest
76 tol_ = mu_*std::pow(one-epsilon_,iter+1); in setData()
84 if ( state.gnorm <= tol_*std::min(one,xnorm) ) { in check()
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| /dports/science/qbox/qbox-public-rel1_73_3/src/ |
| H A D | PositionConstraint.h | 32 double force_, weight_, tol_; variable
37 name1_(name1), tol_(tolerance) in PositionConstraint()
52 double tolerance(void) const { return tol_; } in tolerance()
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| H A D | DistanceConstraint.h | 33 double distance_, velocity_, force_, weight_, tol_; variable
40 velocity_(velocity), tol_(tolerance), m1_(0.0), m2_(0.0) in DistanceConstraint()
56 double tolerance(void) const { return tol_; } in tolerance()
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| H A D | AngleConstraint.h | 33 double angle_, velocity_, force_, weight_, tol_; variable
46 tol_(tolerance), m1_(0.0), m2_(0.0), m3_(0.0) in AngleConstraint()
64 double tolerance(void) const { return tol_; } in tolerance()
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| /dports/math/ipopt/Ipopt-3.12.13/Ipopt/src/Algorithm/ |
| H A D | IpIpoptData.cpp | 55 if (!options.GetNumericValue("resto.tol", tol_, "")) { in Initialize()
56 options.GetNumericValue("tol", tol_, prefix); in Initialize()
57 tol_ *= 1e-2; in Initialize()
61 options.GetNumericValue("tol", tol_, prefix); in Initialize()
64 options.GetNumericValue("tol", tol_, prefix); in Initialize()
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| /dports/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/pb_s_am/pb_shared/src/ |
| H A D | Constants.h | 58 double tol_; variable
137 void set_tol(double val) { tol_ = val; } in set_tol()
157 const double get_tol() const { return tol_; } in get_tol()
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| /dports/science/lammps/lammps-stable_29Sep2021/lib/atc/ |
| H A D | NonLinearSolver.cpp | 25 tol_(1.e-10), in NonLinearSolver()
52 …if (rNorm0_ < tol_*rNorm0P_) { // if a "solution" does pass here rNorm0_ will be too small to allo… in solve()
66 if (rNorm_ < tol_) { in solve()
|