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/dports/biology/fasttree/FastTree-2.1.10_5/
H A DFastTree-2.1.10.c821 double tophitsRefresh = 0.8; /* Refresh if fraction of top-hit-length drops to this */ variable
1702 tophitsRefresh = 0.5; in main()
1767 tophitsRefresh = atof(argv[iArg]); in main()
1772 if (tophitsRefresh <= 0 || tophitsRefresh >= 1) { in main()
1947 tophitsMult, tophitsCloseStr, tophitsRefresh); in main()
8129 : (int)(0.5 + tophits->m * tophitsRefresh) )); in TopHitJoin()
8179 bUseUnique = nUnique >= (int)(0.5 + tophits->m * tophitsRefresh); in TopHitJoin()