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/dports/science/xtb/xtb-6.4.1/src/
H A Drestart.f90122 read(ich) topo%nbond,topo%nangl,topo%ntors,topo%nathbH,topo%nathbAB, &
123 & topo%natxbAB,topo%nbatm,topo%nfrag,topo%nsystem,topo%maxsystem
128 read(ich) topo%nb,topo%bpair,topo%blist,topo%alist, &
129 & topo%tlist,topo%b3list,topo%fraglist,topo%hbatHl,topo%hbatABl, &
133 & topo%gameeq,topo%alpeeq,topo%alphanb,topo%qa, &
188 & topo%nathbH,topo%nathbAB,topo%natxbAB,topo%nbatm,topo%nfrag,topo%nsystem, &
190 …write(ich) topo%nbond_blist,topo%nbond_vbond,topo%nangl_alloc,topo%ntors_alloc,topo%bond_hb_nr,top…
192 write(ich) topo%nb,topo%bpair,topo%blist,topo%alist,topo%tlist,topo%b3list, &
193 … & topo%fraglist,topo%hbatHl,topo%hbatABl,topo%xbatABl,topo%ispinsyst,topo%nspinsyst, &
196 …write(ich) topo%vbond,topo%vangl,topo%vtors,topo%chieeq,topo%gameeq,topo%alpeeq,topo%alphanb,topo%…
[all …]
/dports/net-p2p/c-lightning/lightning-0.10.2/lightningd/
H A Dchaintopology.c45 topo->extend_timer = new_reltimer(topo->ld->timers, topo, in next_topology_timer()
305 notleak(watch_txid(topo, topo, NULL, in watch_for_utxo_reconfirmation()
585 topo->updatefee_timer = new_reltimer(topo->ld->timers, topo, in next_updatefee_timer()
632 topo->prev_tip = topo->tip->blkid; in updates_complete()
935 add_tip(topo, new_block(topo, blk, topo->tip->height + 1)); in get_new_block()
955 topo->root = new_block(topo, blk, topo->max_blockheight); in init_topo()
956 block_map_add(&topo->block_map, topo->root); in init_topo()
957 topo->tip = topo->root; in init_topo()
958 topo->prev_tip = topo->tip->blkid; in init_topo()
974 if (topo->tip->height > topo->headercount) in get_network_blockheight()
[all …]
/dports/science/agrum/aGrUM-29e540d8169268e8fe5d5c69bc4b2b1290f12320/src/testunits/module_BN/
H A DVariableNodeMapTestSuite.h119 TS_ASSERT(topo.empty()) in testEraseVar()
123 fill(topo, idList); in testEraseVar()
125 TS_ASSERT(!topo.empty()) in testEraseVar()
134 topo.erase(i); in testEraseVar()
136 TS_ASSERT(topo.empty()) in testEraseVar()
150 TS_ASSERT(topo.empty()) in testEraseArc()
154 fill(topo, idList); in testEraseArc()
156 TS_ASSERT(!topo.empty()) in testEraseArc()
171 TS_ASSERT(!topo.empty()) in testEraseArc()
188 fill(topo, idList); in testMoralGraph()
[all …]
/dports/net/openmpi3/openmpi-3.1.6/ompi/mca/topo/base/
H A Dtopo_base_dist_graph_create_adjacent.c58 topo->in = topo->inw = NULL; in mca_topo_base_dist_graph_create_adjacent()
59 topo->out = topo->outw = NULL; in mca_topo_base_dist_graph_create_adjacent()
65 topo->in = (int*)malloc(sizeof(int) * topo->indegree); in mca_topo_base_dist_graph_create_adjacent()
69 memcpy(topo->in, sources, sizeof(int) * topo->indegree); in mca_topo_base_dist_graph_create_adjacent()
71 topo->inw = (int*)malloc(sizeof(int) * topo->indegree); in mca_topo_base_dist_graph_create_adjacent()
80 topo->out = (int*)malloc(sizeof(int) * topo->outdegree); in mca_topo_base_dist_graph_create_adjacent()
84 memcpy(topo->out, destinations, sizeof(int) * topo->outdegree); in mca_topo_base_dist_graph_create_adjacent()
106 if( NULL != topo->in ) free(topo->in); in mca_topo_base_dist_graph_create_adjacent()
108 if( NULL != topo->inw ) free(topo->inw); in mca_topo_base_dist_graph_create_adjacent()
110 if( NULL != topo->out ) free(topo->out); in mca_topo_base_dist_graph_create_adjacent()
[all …]
/dports/net/openmpi/openmpi-4.1.1/ompi/mca/topo/base/
H A Dtopo_base_dist_graph_create_adjacent.c58 topo->in = topo->inw = NULL; in mca_topo_base_dist_graph_create_adjacent()
59 topo->out = topo->outw = NULL; in mca_topo_base_dist_graph_create_adjacent()
65 topo->in = (int*)malloc(sizeof(int) * topo->indegree); in mca_topo_base_dist_graph_create_adjacent()
69 memcpy(topo->in, sources, sizeof(int) * topo->indegree); in mca_topo_base_dist_graph_create_adjacent()
71 topo->inw = (int*)malloc(sizeof(int) * topo->indegree); in mca_topo_base_dist_graph_create_adjacent()
80 topo->out = (int*)malloc(sizeof(int) * topo->outdegree); in mca_topo_base_dist_graph_create_adjacent()
84 memcpy(topo->out, destinations, sizeof(int) * topo->outdegree); in mca_topo_base_dist_graph_create_adjacent()
106 if( NULL != topo->in ) free(topo->in); in mca_topo_base_dist_graph_create_adjacent()
108 if( NULL != topo->inw ) free(topo->inw); in mca_topo_base_dist_graph_create_adjacent()
110 if( NULL != topo->out ) free(topo->out); in mca_topo_base_dist_graph_create_adjacent()
[all …]
/dports/net/py-mpi4py/mpi4py-3.1.3/test/
H A Dtest_comm_topo.py28 self.assertEqual(coordinates, topo.Get_coords(topo.rank))
75 topo.Free()
91 topo.Free()
110 topo.Free()
138 topo.Free()
147 topo.Free()
152 topo.Free()
156 topo.Free()
161 topo.Free()
184 topo.Free()
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/dports/biology/protomol/protomol/applications/iSGProtomol-app/integrators/
H A DModifierISG.cpp158 string atom1(topo->atomTypes[topo->atoms[I].type].name); in indexBonds()
159 string atom2(topo->atomTypes[topo->atoms[J].type].name); in indexBonds()
191 string atom1 = topo->atomTypes[topo->atoms[I].type].name; in indexBonds()
192 string atom2 = topo->atomTypes[topo->atoms[J].type].name; in indexBonds()
193 string atom3 = topo->atomTypes[topo->atoms[K].type].name; in indexBonds()
230 string atom1 = topo->atomTypes[topo->atoms[I].type].name; in indexBonds()
231 string atom2 = topo->atomTypes[topo->atoms[J].type].name; in indexBonds()
232 string atom3 = topo->atomTypes[topo->atoms[K].type].name; in indexBonds()
233 string atom4 = topo->atomTypes[topo->atoms[L].type].name; in indexBonds()
272 string atom1 = topo->atomTypes[topo->atoms[I].type].name; in indexBonds()
[all …]
/dports/science/xtb/xtb-6.4.1/src/gfnff/
H A Dgfnff_ini.f90248 topo%nbond = sum(topo%bpair)
249 topo%nbond_blist = topo%nbond
474 topo%qfrag(2:topo%nfrag)=0
507 call goedeckera(env,mol%n,mol%at,topo%nb,rtmp,topo%qa,ees,topo)
1004 topo%nbond_vbond = topo%nbond
1357 fqq=1.0d0-(topo%qa(ii)*topo%qa(jj)+topo%qa(ii)*topo%qa(kk))*gen%qfacBEN*2.5
1571 topo%ntors=topo%ntors+topo%nb(20,ii)*topo%nb(20,jj)*2 ! upper limit
1732 …& ii,jj,kk,ll,topo%tlist(5,topo%ntors),rings,topo%vtors(1,topo%ntors)*180./pi,phi*180./…
1754 …& ii,jj,kk,ll,topo%tlist(5,topo%ntors),rings,topo%vtors(1,topo%ntors)*180./pi,phi*180./…
1772 topo%ntors=topo%ntors+1
[all …]
H A Dgfnff_setup.f90144 topo%nfrag = maxval(topo%fraglist)
145 if (.not.allocated(topo%qpdb)) allocate(topo%qpdb(mol%n))
147 topo%qfrag(topo%fraglist(iatom)) = topo%qfrag(topo%fraglist(iatom)) &
151 ichrg=idint(sum(topo%qfrag(1:topo%nfrag)))
157 topo%nb=0
158 topo%nfrag=0
163 ni=topo%nb(20,i)
172 topo%nb(20,i)=topo%nb(20,i)+1
173 topo%nb(topo%nb(20,i),i)=j
174 topo%nb(20,j)=topo%nb(20,j)+1
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/dports/biology/protomol/protomol/framework/topology/
H A DbuildCellLists.cpp13 topo->cellManager.initialize(topo->cellLists,topo->min,topo->max,true); in buildCellLists()
14 Vector3D delta(topo->boundaryConditions.origin()-topo->min); in buildCellLists()
19 myCell=topo->cellManager.findCell(delta+ in buildCellLists()
25 topo->atoms[i].cellListNext=-1; in buildCellLists()
26 topo->cellLists[myCell]=i; in buildCellLists()
32 topo->cellManager.updateCache(topo->cellLists); in buildCellLists()
38 topo->cellManager.initialize(topo->cellLists,topo->min,topo->max,false); in buildCellLists()
39 Vector3D delta(topo->boundaryConditions.origin()-topo->min); in buildCellLists()
49 topo->atoms[i].cellListNext=-1; in buildCellLists()
50 topo->cellLists[myCell]=i; in buildCellLists()
[all …]
/dports/math/moab/fathomteam-moab-7bde9dfb84a8/src/mesquite/Mesh/
H A DTopologyInfo.hpp45 { return topo > MIXED ? 0 : instance.longNames[topo]; } in name()
47 { return topo > MIXED ? 0 : instance.shortNames[topo]; } in short_name()
51 { return topo >= MIXED ? 0: instance.dimMap[topo]; } in dimension()
59 { return (topo >= MIXED) ? 0 : instance.adjMap[topo][dimension]; } in adjacent()
68 static unsigned sides( EntityTopology topo ) in sides() argument
69 { return (topo >= MIXED || instance.dimMap[topo] < 1) ? 0 : in sides()
70 instance.adjMap[topo][instance.dimMap[topo]-1]; } in sides()
79 { return adjacent(topo, 0); } in corners()
82 static unsigned edges( EntityTopology topo ) in edges() argument
83 { return adjacent(topo, 1); } in edges()
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/dports/sysutils/cpufetch/cpufetch-1.00/src/x86/
H A Dapic.c127 topo->apic->pkg_mask_shift += topo->apic->smt_mask_width; in fill_topo_masks_apic()
128 topo->apic->core_mask <<= topo->apic->smt_mask_width; in fill_topo_masks_apic()
129 topo->apic->pkg_mask = (-1) ^ (topo->apic->core_mask | topo->apic->smt_mask); in fill_topo_masks_apic()
179 topo->apic->core_mask = coreplus_smt_mask ^ topo->apic->smt_mask; in fill_topo_masks_x2apic()
183 topo->apic->pkg_mask_shift = topo->apic->smt_mask_width; in fill_topo_masks_x2apic()
184 topo->apic->pkg_mask = (-1) ^ topo->apic->smt_mask; in fill_topo_masks_x2apic()
228 topo->sockets++; in build_topo_from_apic()
233 topo->logical_cores = topo->total_cores / topo->sockets; in build_topo_from_apic()
234 topo->physical_cores = topo->logical_cores / topo->smt_available; in build_topo_from_apic()
408 topo->smt_supported = topo->smt_available; in get_topology_from_apic()
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/dports/net/mpich2/mpich2-1.5/src/mpi/topo/
H A DMakefile.mk8 src/mpi/topo/cart_coords.c \
9 src/mpi/topo/cart_create.c \
10 src/mpi/topo/cart_get.c \
11 src/mpi/topo/cart_map.c \
12 src/mpi/topo/cart_rank.c \
13 src/mpi/topo/cart_shift.c \
14 src/mpi/topo/cart_sub.c \
15 src/mpi/topo/dims_create.c \
37 src/mpi/topo/nhb_alltoallw.c
40 src/mpi/topo/topoutil.c
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/dports/devel/librttopo/librttopo-1.1.0/headers/
H A Dlibrttopo.h203 const RTT_BE_TOPOLOGY* topo,
228 const RTT_BE_TOPOLOGY* topo,
247 const RTT_BE_TOPOLOGY* topo,
269 const RTT_BE_TOPOLOGY* topo,
294 const RTT_BE_TOPOLOGY* topo,
310 const RTT_BE_TOPOLOGY* topo
327 const RTT_BE_TOPOLOGY* topo,
351 const RTT_BE_TOPOLOGY* topo,
374 const RTT_BE_TOPOLOGY* topo,
389 const RTT_BE_TOPOLOGY* topo,
[all …]
/dports/databases/postgis25/postgis-2.5.5/liblwgeom/
H A Dliblwgeom_topo.h203 const LWT_BE_TOPOLOGY* topo,
229 const LWT_BE_TOPOLOGY* topo,
249 const LWT_BE_TOPOLOGY* topo,
271 const LWT_BE_TOPOLOGY* topo,
296 const LWT_BE_TOPOLOGY* topo,
312 const LWT_BE_TOPOLOGY* topo
330 const LWT_BE_TOPOLOGY* topo,
354 const LWT_BE_TOPOLOGY* topo,
377 const LWT_BE_TOPOLOGY* topo,
392 const LWT_BE_TOPOLOGY* topo,
[all …]
/dports/net-mgmt/spectools/spectools-2011-08-R1/
H A Dspectool_gtk_topo.c95 SpectoolTopo *topo; in spectool_topo_draw() local
107 if (topo->sch == 0 || topo->scw == 0) { in spectool_topo_draw()
108 printf("debug - sch or scw 0? %d %d\n", topo->sch, topo->scw); in spectool_topo_draw()
132 ((float) (topo->sample_counts[(samp * topo->sch) + db] * 1.5f) / in spectool_topo_draw()
136 if (cpos > topo->colormap_len) cpos = topo->colormap_len - 1; in spectool_topo_draw()
180 if (topo->sweep_count_num > 0 && topo->sweep_peak_max > 0) { in spectool_topo_update()
270 topo->scw = in spectool_topo_wdr_sweep()
274 malloc(sizeof(unsigned int) * topo->sch * topo->scw); in spectool_topo_wdr_sweep()
277 sizeof(unsigned int) * topo->sch * topo->scw); in spectool_topo_wdr_sweep()
288 sizeof(unsigned int) * topo->sch * topo->scw); in spectool_topo_wdr_sweep()
[all …]
/dports/databases/postgis32/postgis-3.2.0/liblwgeom/
H A Dliblwgeom_topo.h298 const LWT_BE_TOPOLOGY* topo
335 const LWT_BE_TOPOLOGY* topo,
378 const LWT_BE_TOPOLOGY* topo,
394 const LWT_BE_TOPOLOGY* topo,
481 const LWT_BE_TOPOLOGY* topo,
502 const LWT_BE_TOPOLOGY* topo,
533 const LWT_BE_TOPOLOGY* topo,
663 const LWT_BE_TOPOLOGY* topo
670 const LWT_BE_TOPOLOGY* topo
678 const LWT_BE_TOPOLOGY* topo
[all …]
/dports/sysutils/cpufetch/cpufetch-1.00/src/ppc/
H A Dppc.c81 topo->sockets++; in get_topology_info()
97 topo->physical_cores++; in get_topology_info()
102 topo->physical_cores = topo->physical_cores / topo->sockets; // only count cores on one socket in get_topology_info()
103 topo->logical_cores = topo->total_cores / topo->sockets; // only count threads on one socket in get_topology_info()
104 topo->smt_supported = topo->logical_cores / topo->physical_cores; in get_topology_info()
111 return topo; in get_topology_info()
147 int64_t flops = topo->physical_cores * topo->sockets * (freq * 1000000); in get_peak_performance()
154 int threads_per_core = topo->logical_cores / topo->physical_cores; in get_peak_performance()
201 if(topo->smt_supported > 1) { in get_str_topology()
205 …intf(string, size, "%d cores (%d threads)", topo->physical_cores * topo->sockets, topo->logical_co… in get_str_topology()
[all …]
/dports/databases/spatialite/libspatialite-5.0.1/src/topology/
H A Dgaia_topostmts.c95 if (topo == NULL) in do_create_stmt_getNodeWithinDistance2D()
133 if (topo == NULL) in do_create_stmt_getNodeWithinBox2D()
169 if (topo == NULL) in do_create_stmt_insertNodes()
204 if (topo == NULL) in do_create_stmt_getEdgeWithinDistance2D()
242 if (topo == NULL) in do_create_stmt_getEdgeWithinBox2D()
279 if (topo == NULL) in do_create_stmt_getAllEdges()
313 if (topo == NULL) in do_create_stmt_getFaceContainingPoint_1()
348 if (topo == NULL) in do_create_stmt_getFaceContainingPoint_2()
381 if (topo == NULL) in do_create_stmt_insertEdges()
415 if (topo == NULL) in do_create_stmt_getNextEdgeId()
[all …]
/dports/databases/postgis30/postgis-3.0.4/liblwgeom/
H A Dliblwgeom_topo.h298 const LWT_BE_TOPOLOGY* topo
335 const LWT_BE_TOPOLOGY* topo,
370 const LWT_BE_TOPOLOGY* topo,
393 const LWT_BE_TOPOLOGY* topo,
409 const LWT_BE_TOPOLOGY* topo,
496 const LWT_BE_TOPOLOGY* topo,
517 const LWT_BE_TOPOLOGY* topo,
548 const LWT_BE_TOPOLOGY* topo,
678 const LWT_BE_TOPOLOGY* topo
685 const LWT_BE_TOPOLOGY* topo
[all …]
/dports/databases/postgis31/postgis-3.1.4/liblwgeom/
H A Dliblwgeom_topo.h298 const LWT_BE_TOPOLOGY* topo
335 const LWT_BE_TOPOLOGY* topo,
370 const LWT_BE_TOPOLOGY* topo,
393 const LWT_BE_TOPOLOGY* topo,
409 const LWT_BE_TOPOLOGY* topo,
496 const LWT_BE_TOPOLOGY* topo,
517 const LWT_BE_TOPOLOGY* topo,
548 const LWT_BE_TOPOLOGY* topo,
678 const LWT_BE_TOPOLOGY* topo
685 const LWT_BE_TOPOLOGY* topo
[all …]
/dports/biology/protomol/protomol/applications/iSGProtomol-app/frontend/
H A DbuildISGTopology.cpp125 topo->degreesOfFreedom = 3 * topo->atoms.size() - 3; in buildISGTopology()
154 string bond1(topo->atomTypes[topo->atoms[atom1].type].name); in buildISGTopology()
155 string bond2(topo->atomTypes[topo->atoms[atom2].type].name); in buildISGTopology()
220 string angle1(topo->atomTypes[topo->atoms[atom1].type].name); in buildISGTopology()
221 string angle2(topo->atomTypes[topo->atoms[atom2].type].name); in buildISGTopology()
222 string angle3(topo->atomTypes[topo->atoms[atom3].type].name); in buildISGTopology()
356 topo->dihedrals[topo->dihedrals.size()-1].atom1 != atom1 || in buildISGTopology()
357 topo->dihedrals[topo->dihedrals.size()-1].atom2 != atom2 || in buildISGTopology()
358 topo->dihedrals[topo->dihedrals.size()-1].atom3 != atom3 || in buildISGTopology()
359 topo->dihedrals[topo->dihedrals.size()-1].atom4 != atom4){ in buildISGTopology()
[all …]
/dports/net/frr7-pythontools/frr-frr-7.5.1/tests/topotests/lib/
H A Dtopojson.py48 def build_topo_from_json(tgen, topo): argument
67 if "ipv4base" in topo:
70 if topo["link_ip_start"]["v4mask"] < 32:
72 if "ipv6base" in topo:
75 if topo["link_ip_start"]["v6mask"] < 127:
78 topo["routers"][router]["nextIfname"] = 0
83 if "links" in topo["routers"][curRouter]:
105 topo["lo_prefix"]["ipv4"],
115 topo["lo_prefix"]["ipv6"],
216 data = topo["routers"]
[all …]
/dports/net/frr7/frr-frr-7.5.1/tests/topotests/lib/
H A Dtopojson.py48 def build_topo_from_json(tgen, topo): argument
67 if "ipv4base" in topo:
70 if topo["link_ip_start"]["v4mask"] < 32:
72 if "ipv6base" in topo:
75 if topo["link_ip_start"]["v6mask"] < 127:
78 topo["routers"][router]["nextIfname"] = 0
83 if "links" in topo["routers"][curRouter]:
105 topo["lo_prefix"]["ipv4"],
115 topo["lo_prefix"]["ipv6"],
216 data = topo["routers"]
[all …]
/dports/biology/protomol/protomol/applications/iSGProtomol-app/forces/
H A DiSGLennardJonesForce.h141 if (topo->atoms[atom1].type <= topo->atoms[atom2].type) { in operator()
152 if (topo->atoms[atom1].type <= topo->atoms[atom2].type) i = topo->molecules[M1].newtype; in operator()
160 if (topo->atoms[atom1].type <= topo->atoms[atom2].type) j = topo->molecules[M2].newtype; in operator()
166 params = topo->isgLJParms(i,j,topo->atoms[atom1].type,topo->atoms[atom2].type); in operator()
228 if (topo->atoms[atom1].type <= topo->atoms[atom2].type) { in operator()
245 if (topo->atoms[atom1].type <= topo->atoms[atom2].type) { in operator()
259 params_old = topo->isgLJParms(i,j,topo->atoms[atom1].type,topo->atoms[atom2].type); in operator()
263 if (topo->atoms[atom1].type <= topo->atoms[atom2].type) i = type1_new; in operator()
271 params_new = topo->isgLJParms(i,j,topo->atoms[atom1].type,topo->atoms[atom2].type); in operator()
347 params_old = topo->isgLJParms(j,j,topo->atoms[atom1].type,topo->atoms[atom2].type); in operator()
[all …]

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