Searched refs:total_unmatched (Results 1 – 1 of 1) sorted by relevance
3374 int ret = 0, total_unmatched = 0; in full_indel_alignment() local3429 total_unmatched += section_mismatch; in full_indel_alignment()3435 total_unmatched += ((probe_poses[xk1+1] - probe_poses[xk1]) - matched); in full_indel_alignment()3439 if(ret>3|| total_unmatched>INDEL_FULL_ALIGN_MAX_MISMATCH || total_delta == 0) in full_indel_alignment()3447 indel_quality[xk1] *= pow(2.,-(ret * (1+total_unmatched))); in full_indel_alignment()