Searched refs:transcript1 (Results 1 – 9 of 9) sorted by relevance
/dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/tools/funcotator/dataSources/gencode/ |
H A D | DataProviderForExampleGencodeGtfGene.java | 362 transcript1.addExon(exon1); in createGencodeGtfGeneFeature() 363 transcript1.addExon(exon2); in createGencodeGtfGeneFeature() 364 transcript1.addExon(exon3); in createGencodeGtfGeneFeature() 365 transcript1.addExon(exon4); in createGencodeGtfGeneFeature() 366 transcript1.addExon(exon5); in createGencodeGtfGeneFeature() 367 transcript1.addUtr(utr1); in createGencodeGtfGeneFeature() 368 transcript1.addUtr(utr2); in createGencodeGtfGeneFeature() 370 gene.addTranscript(transcript1); in createGencodeGtfGeneFeature() 516 transcript1.addUtr(fivePUtr); in dynamicallyCreateTestGencodeGtfGeneFeature() 517 transcript1.addUtr(threePUtr); in dynamicallyCreateTestGencodeGtfGeneFeature() [all …]
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H A D | GencodeFuncotationFactoryUnitTest.java | 715 …final GencodeGtfTranscriptFeature transcript1 = (GencodeGtfTranscriptFeature) GencodeGtfFeature.cr… in provideForCreateDefaultFuncotationsOnProblemVariant() local 716 gene.addTranscript(transcript1); in provideForCreateDefaultFuncotationsOnProblemVariant() 740 .setAnnotationTranscript(transcript1.getTranscriptName()) in provideForCreateDefaultFuncotationsOnProblemVariant() 748 .setGeneTranscriptType(transcript1.getTranscriptType()) in provideForCreateDefaultFuncotationsOnProblemVariant()
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/dports/biology/emboss/EMBOSS-6.6.0/ajax/ensembl/ |
H A D | enstranscript.c | 4437 if (!transcript1) in ensTranscriptSimilarity() 4443 if (transcript1 == transcript2) in ensTranscriptSimilarity() 7105 transcript1, in listTranscriptCompareEndAscending() 7111 if (transcript1 && (!transcript2)) in listTranscriptCompareEndAscending() 7117 if ((!transcript1) && transcript2) in listTranscriptCompareEndAscending() 7157 transcript1, in listTranscriptCompareEndDescending() 7163 if (transcript1 && (!transcript2)) in listTranscriptCompareEndDescending() 7169 if ((!transcript1) && transcript2) in listTranscriptCompareEndDescending() 7209 transcript1, in listTranscriptCompareIdentifierAscending() 7266 transcript1, in listTranscriptCompareStartAscending() [all …]
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H A D | enstranscript.h | 243 AjBool ensTranscriptSimilarity(EnsPTranscript transcript1,
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H A D | ensgene.c | 2980 EnsPTranscript transcript1 = NULL; in ensGeneSimilarity() local 3014 transcript1 = (EnsPTranscript) ajListIterGet(iter1); in ensGeneSimilarity() 3024 if (ensTranscriptSimilarity(transcript1, transcript2)) in ensGeneSimilarity()
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/dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/utils/codecs/gtf/ |
H A D | GencodeGtfCodecUnitTest.java | 1190 transcript1.addExon(exon1); in createGencodeGtfGene_gencode_valid_gencode_file2() 1191 transcript1.addExon(exon2); in createGencodeGtfGene_gencode_valid_gencode_file2() 1192 transcript1.addExon(exon3); in createGencodeGtfGene_gencode_valid_gencode_file2() 1201 transcript1.addUtr(utr1); in createGencodeGtfGene_gencode_valid_gencode_file2() 1202 transcript1.addUtr(utr2); in createGencodeGtfGene_gencode_valid_gencode_file2() 2268 transcript1.addUtr(utr1); in createGencodeGtfGene_gencode_and_this_is_a_valid_one_too_table() 2269 transcript1.addUtr(utr2); in createGencodeGtfGene_gencode_and_this_is_a_valid_one_too_table() 2270 transcript1.addUtr(utr3); in createGencodeGtfGene_gencode_and_this_is_a_valid_one_too_table() 3295 transcript1.addUtr(utr1); in createGencodeGtfGene_gencode_v19_and_this_is_a_valid_one_too() 3296 transcript1.addUtr(utr2); in createGencodeGtfGene_gencode_v19_and_this_is_a_valid_one_too() [all …]
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/dports/security/fizz/fizz-2021.12.27.00/fizz/protocol/test/ |
H A D | KeySchedulerTest.cpp | 186 StringPiece transcript1("transcript1"); in TEST_F() local 191 EXPECT_CALL(*kd_, deriveSecret(_, _, Eq(folly::ByteRange(transcript1)))) in TEST_F() 195 ks_->getSecret(HandshakeSecrets::ServerHandshakeTraffic, transcript1); in TEST_F() 197 ks_->getSecret(HandshakeSecrets::ClientHandshakeTraffic, transcript1); in TEST_F()
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/dports/biology/jalview/jalview/test/jalview/io/vcf/ |
H A D | VCFLoaderTest.java | 269 SequenceI transcript1 = alignment.findName("transcript1"); in buildAlignment() local 270 from = new int[] { transcript1.getStart(), transcript1.getEnd() }; in buildAlignment() 271 transcript1.setGeneLoci("homo_sapiens", "GRCh38", "17", new MapList( in buildAlignment() 304 transcript1.addDBRef(product); in buildAlignment()
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/dports/biology/artemis/artemis-17.0.1-11-g3e43d27e/uk/ac/sanger/artemis/components/ |
H A D | EditMenu.java | 1463 final uk.ac.sanger.artemis.io.Feature transcript1 = chadoGene.getTranscripts().get(0); in gffMergeFeatures() local 1465 mergeQualifiers(transcript1, transcript2); in gffMergeFeatures() 1468 chadoGene.getProteinOfTranscript(GeneUtils.getUniqueName(transcript1)); in gffMergeFeatures()
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