| /dports/biology/treepuzzle/tree-puzzle-5.2/src/ |
| H A D | pstep-trueID.c | 540 ivector trueIDtmp; /* species permutation (trueID) */ in allpstep() local
572 trueIDtmp = new_ivector(Maxspc); in allpstep()
576 fixedchooser(Maxspc, Maxspc, trueIDtmp); in allpstep()
579 chooser(Maxspc, Maxspc, trueIDtmp); in allpstep()
581 permutetaxa_ss(Maxspc, trueIDtmp, Namestr, in allpstep()
590 onepstep(&tmpedgeset, &tmpedgeofleaf, quartetinfo, Maxspc, trueIDtmp); in allpstep()
596 computebiparts_trueID(tmpedgeset, tmpedgeofleaf, trueIDtmp, in allpstep()
605 computebiparts_trueID(tmpedgeset, tmpedgeofleaf, trueIDtmp, in allpstep()
633 copytree_trueID(ctree, trueIDtmp, tmpedgeset, tmpedgeofleaf, Maxspc); in allpstep()
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| H A D | pstep.c | 706 ivector trueIDtmp; /* species permutation (trueID) */ in allpstep() local
745 trueIDtmp = new_ivector(Maxspc); in allpstep()
749 fixedchooser(Maxspc, Maxspc, trueIDtmp); in allpstep()
752 chooser(Maxspc, Maxspc, trueIDtmp); in allpstep()
757 permutetaxa_ss(Maxspc, trueIDtmp, Namestr, in allpstep()
769 trueIDtmp); in allpstep()
775 trueIDtmp); in allpstep()
781 trueIDtmp); in allpstep()
787 trueIDtmp); in allpstep()
885 free_ivector(trueIDtmp); in allpstep()
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| H A D | pstep-mrca.c | 528 ivector trueIDtmp; /* species permutation (trueID) */ in allpstep() local
560 trueIDtmp = new_ivector(Maxspc); in allpstep()
565 fixedchooser(Maxspc, Maxspc, trueIDtmp); in allpstep()
567 chooser(Maxspc, Maxspc, trueIDtmp); in allpstep()
571 onepstep(&tmpedgeset, &tmpedgeofleaf, quartetinfo, Maxspc, trueIDtmp); in allpstep()
576 computebiparts(tmpedgeset, tmpedgeofleaf, trueIDtmp, in allpstep()
584 computebiparts(tmpedgeset, tmpedgeofleaf, trueIDtmp, in allpstep()
611 copytree(ctree, trueIDtmp, tmpedgeset, tmpedgeofleaf, Maxspc); in allpstep()
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| H A D | pstep-recursive.c | 528 ivector trueIDtmp; /* species permutation (trueID) */ in allpstep() local
560 trueIDtmp = new_ivector(Maxspc); in allpstep()
565 fixedchooser(Maxspc, Maxspc, trueIDtmp); in allpstep()
567 chooser(Maxspc, Maxspc, trueIDtmp); in allpstep()
571 onepstep(&tmpedgeset, &tmpedgeofleaf, quartetinfo, Maxspc, trueIDtmp); in allpstep()
576 computebiparts(tmpedgeset, tmpedgeofleaf, trueIDtmp, in allpstep()
584 computebiparts(tmpedgeset, tmpedgeofleaf, trueIDtmp, in allpstep()
611 copytree(ctree, trueIDtmp, tmpedgeset, tmpedgeofleaf, Maxspc); in allpstep()
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| H A D | pstep-split.c | 669 ivector trueIDtmp; /* species permutation (trueID) */ in allpstep_split() local
701 trueIDtmp = new_ivector(Maxspc); in allpstep_split()
705 fixedchooser(Maxspc, Maxspc, trueIDtmp); in allpstep_split()
708 chooser(Maxspc, Maxspc, trueIDtmp); in allpstep_split()
710 permutetaxa_ss(Maxspc, trueIDtmp, Namestr, in allpstep_split()
719 onepstep_split(&tmpedgeset, &tmpedgeofleaf, quartetinfo, Maxspc, trueIDtmp); in allpstep_split()
724 computebiparts_trueID(tmpedgeset, tmpedgeofleaf, trueIDtmp, in allpstep_split()
732 computebiparts_trueID(tmpedgeset, tmpedgeofleaf, trueIDtmp, in allpstep_split()
759 copytree_trueID(ctree, trueIDtmp, tmpedgeset, tmpedgeofleaf, Maxspc); in allpstep_split()
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| /dports/biology/treepuzzle/tree-puzzle-5.2/ |
| H A D | ChangeLog | 141 trueIDtmp (allpstep),
|