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Searched refs:uFromColIndex (Results 1 – 7 of 7) sorted by relevance

/dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/umuscle/src/
H A DrefinevertP.cpp120 const unsigned uFromColIndex = r.m_uBestColLeft; in RefineVertP() local
121 const unsigned uRangeColCount = r.m_uBestColRight - uFromColIndex; in RefineVertP()
127 MSAFromColRange(*msaIn, uFromColIndex, 1, msaRange); in RefineVertP()
131 MSAFromColRange(*msaIn, uFromColIndex, uRangeColCount, msaRange); in RefineVertP()
/dports/biology/muscle/muscle-3.8.1551/
H A Drefinevert.cpp112 const unsigned uFromColIndex = r.m_uBestColLeft; in RefineVert() local
113 const unsigned uRangeColCount = r.m_uBestColRight - uFromColIndex; in RefineVert()
119 MSAFromColRange(msaIn, uFromColIndex, 1, msaRange); in RefineVert()
123 MSAFromColRange(msaIn, uFromColIndex, uRangeColCount, msaRange); in RefineVert()
H A Dmsa2.cpp216 void MSAFromColRange(const MSA &msaIn, unsigned uFromColIndex, unsigned uColCount, in MSAFromColRange() argument
222 if (uFromColIndex + uColCount - 1 > uInColCount) in MSAFromColRange()
236 const char c = msaIn.GetChar(uSeqIndex, uFromColIndex + uColIndex); in MSAFromColRange()
H A Dmsa.h165 void MSAFromColRange(const MSA &msaIn, unsigned uFromColIndex, unsigned uColCount,
/dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/umuscle/src/muscle/
H A Drefinevert.cpp116 const unsigned uFromColIndex = r.m_uBestColLeft; in RefineVert() local
117 const unsigned uRangeColCount = r.m_uBestColRight - uFromColIndex; in RefineVert()
123 MSAFromColRange(msaIn, uFromColIndex, 1, msaRange); in RefineVert()
127 MSAFromColRange(msaIn, uFromColIndex, uRangeColCount, msaRange); in RefineVert()
H A Dmsa2.cpp228 void MSAFromColRange(const MSA &msaIn, unsigned uFromColIndex, unsigned uColCount, in MSAFromColRange() argument
234 if (uFromColIndex + uColCount - 1 > uInColCount) in MSAFromColRange()
248 const char c = msaIn.GetChar(uSeqIndex, uFromColIndex + uColIndex); in MSAFromColRange()
H A Dmsa.h171 void MSAFromColRange(const MSA &msaIn, unsigned uFromColIndex, unsigned uColCount,