/dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/umuscle/src/muscle/ |
H A D | distfunc.cpp | 26 float DistFunc::GetDist(unsigned uIndex1, unsigned uIndex2) const in GetDist() 28 return m_Dists[VectorIndex(uIndex1, uIndex2)]; in GetDist() 52 void DistFunc::SetDist(unsigned uIndex1, unsigned uIndex2, float dDist) in SetDist() argument 54 m_Dists[VectorIndex(uIndex1, uIndex2)] = dDist; in SetDist() 55 m_Dists[VectorIndex(uIndex2, uIndex1)] = dDist; in SetDist() 58 unsigned DistFunc::VectorIndex(unsigned uIndex1, unsigned uIndex2) const in VectorIndex() 60 assert(uIndex1 < m_uCount && uIndex2 < m_uCount); in VectorIndex() 61 return uIndex1*m_uCount + uIndex2; in VectorIndex()
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H A D | clust.h | 72 void SetDist(unsigned uIndex1, unsigned uIndex2, float dDist); 73 float GetDist(unsigned uIndex1, unsigned uIndex2) const; 102 unsigned VectorIndex(unsigned uIndex1, unsigned uIndex2) const; 107 float ComputeMetric(unsigned uIndex1, unsigned uIndex2) const; 112 void InsertMetric(unsigned uIndex1, unsigned uIndex2, float dMetric); 116 void DeleteMetric(unsigned uIndex1, unsigned uIndex2);
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H A D | clust.cpp | 500 if (uIndex1 >= uNodeCount || uIndex2 >= uNodeCount) in VectorIndex() 501 Quit("DistVectorIndex(%u,%u) %u", uIndex1, uIndex2, uNodeCount); in VectorIndex() 503 if (uIndex1 >= uIndex2) in VectorIndex() 504 v = uIndex2 + (uIndex1*(uIndex1 - 1))/2; in VectorIndex() 506 v = uIndex1 + (uIndex2*(uIndex2 - 1))/2; in VectorIndex() 511 float Clust::GetDist(unsigned uIndex1, unsigned uIndex2) const in GetDist() 513 unsigned v = VectorIndex(uIndex1, uIndex2); in GetDist() 517 void Clust::SetDist(unsigned uIndex1, unsigned uIndex2, float dDist) in SetDist() argument 519 unsigned v = VectorIndex(uIndex1, uIndex2); in SetDist() 618 return ComputeMetricNearestNeighbor(uIndex1, uIndex2); in ComputeMetric() [all …]
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H A D | distfunc.h | 12 virtual void SetDist(unsigned uIndex1, unsigned uIndex2, float dDist); 19 virtual float GetDist(unsigned uIndex1, unsigned uIndex2) const; 25 unsigned VectorIndex(unsigned uIndex, unsigned uIndex2) const;
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H A D | upgma2.cpp | 58 static inline unsigned TriangleSubscript(unsigned uIndex1, unsigned uIndex2) in TriangleSubscript() argument 63 if (uIndex1 >= g_uLeafCount || uIndex2 >= g_uLeafCount) in TriangleSubscript() 64 Quit("TriangleSubscript(%u,%u) %u", uIndex1, uIndex2, g_uLeafCount); in TriangleSubscript() 67 if (uIndex1 >= uIndex2) in TriangleSubscript() 68 v = uIndex2 + (uIndex1*(uIndex1 - 1))/2; in TriangleSubscript() 70 v = uIndex1 + (uIndex2*(uIndex2 - 1))/2; in TriangleSubscript()
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/dports/biology/muscle/muscle-3.8.1551/ |
H A D | distfunc.cpp | 26 float DistFunc::GetDist(unsigned uIndex1, unsigned uIndex2) const in GetDist() 28 return m_Dists[VectorIndex(uIndex1, uIndex2)]; in GetDist() 52 void DistFunc::SetDist(unsigned uIndex1, unsigned uIndex2, float dDist) in SetDist() argument 54 m_Dists[VectorIndex(uIndex1, uIndex2)] = dDist; in SetDist() 55 m_Dists[VectorIndex(uIndex2, uIndex1)] = dDist; in SetDist() 58 unsigned DistFunc::VectorIndex(unsigned uIndex1, unsigned uIndex2) const in VectorIndex() 60 assert(uIndex1 < m_uCount && uIndex2 < m_uCount); in VectorIndex() 61 return uIndex1*m_uCount + uIndex2; in VectorIndex()
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H A D | clust.h | 72 void SetDist(unsigned uIndex1, unsigned uIndex2, float dDist); 73 float GetDist(unsigned uIndex1, unsigned uIndex2) const; 102 unsigned VectorIndex(unsigned uIndex1, unsigned uIndex2) const; 107 float ComputeMetric(unsigned uIndex1, unsigned uIndex2) const; 112 void InsertMetric(unsigned uIndex1, unsigned uIndex2, float dMetric); 116 void DeleteMetric(unsigned uIndex1, unsigned uIndex2);
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H A D | clust.cpp | 496 if (uIndex1 >= uNodeCount || uIndex2 >= uNodeCount) in VectorIndex() 497 Quit("DistVectorIndex(%u,%u) %u", uIndex1, uIndex2, uNodeCount); in VectorIndex() 499 if (uIndex1 >= uIndex2) in VectorIndex() 500 v = uIndex2 + (uIndex1*(uIndex1 - 1))/2; in VectorIndex() 502 v = uIndex1 + (uIndex2*(uIndex2 - 1))/2; in VectorIndex() 507 float Clust::GetDist(unsigned uIndex1, unsigned uIndex2) const in GetDist() 509 unsigned v = VectorIndex(uIndex1, uIndex2); in GetDist() 513 void Clust::SetDist(unsigned uIndex1, unsigned uIndex2, float dDist) in SetDist() argument 515 unsigned v = VectorIndex(uIndex1, uIndex2); in SetDist() 614 return ComputeMetricNearestNeighbor(uIndex1, uIndex2); in ComputeMetric() [all …]
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H A D | distfunc.h | 12 virtual void SetDist(unsigned uIndex1, unsigned uIndex2, float dDist); 19 virtual float GetDist(unsigned uIndex1, unsigned uIndex2) const; 25 unsigned VectorIndex(unsigned uIndex, unsigned uIndex2) const;
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H A D | upgma2.cpp | 53 static inline unsigned TriangleSubscript(unsigned uIndex1, unsigned uIndex2) in TriangleSubscript() argument 56 if (uIndex1 >= g_uLeafCount || uIndex2 >= g_uLeafCount) in TriangleSubscript() 57 Quit("TriangleSubscript(%u,%u) %u", uIndex1, uIndex2, g_uLeafCount); in TriangleSubscript() 60 if (uIndex1 >= uIndex2) in TriangleSubscript() 61 v = uIndex2 + (uIndex1*(uIndex1 - 1))/2; in TriangleSubscript() 63 v = uIndex1 + (uIndex2*(uIndex2 - 1))/2; in TriangleSubscript()
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/dports/biology/clustal-omega/clustal-omega-1.2.4/src/clustal/ |
H A D | muscle_upgma.c | 70 ulong TriangleSubscript(uint uIndex1, uint uIndex2); 152 TriangleSubscript(uint uIndex1, uint uIndex2) in TriangleSubscript() argument 156 if (uIndex1 >= g_uLeafCount || uIndex2 >= g_uLeafCount) in TriangleSubscript() 157 Log(&rLog, LOG_FATAL, "TriangleSubscript(%u,%u) %u", uIndex1, uIndex2, g_uLeafCount); in TriangleSubscript() 159 if (uIndex1 >= uIndex2) in TriangleSubscript() 160 v = uIndex2 + (uIndex1*(uIndex1 - 1))/2; in TriangleSubscript() 162 v = uIndex1 + (uIndex2*(uIndex2 - 1))/2; in TriangleSubscript()
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