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Searched refs:uIndex2 (Results 1 – 11 of 11) sorted by relevance

/dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/umuscle/src/muscle/
H A Ddistfunc.cpp26 float DistFunc::GetDist(unsigned uIndex1, unsigned uIndex2) const in GetDist()
28 return m_Dists[VectorIndex(uIndex1, uIndex2)]; in GetDist()
52 void DistFunc::SetDist(unsigned uIndex1, unsigned uIndex2, float dDist) in SetDist() argument
54 m_Dists[VectorIndex(uIndex1, uIndex2)] = dDist; in SetDist()
55 m_Dists[VectorIndex(uIndex2, uIndex1)] = dDist; in SetDist()
58 unsigned DistFunc::VectorIndex(unsigned uIndex1, unsigned uIndex2) const in VectorIndex()
60 assert(uIndex1 < m_uCount && uIndex2 < m_uCount); in VectorIndex()
61 return uIndex1*m_uCount + uIndex2; in VectorIndex()
H A Dclust.h72 void SetDist(unsigned uIndex1, unsigned uIndex2, float dDist);
73 float GetDist(unsigned uIndex1, unsigned uIndex2) const;
102 unsigned VectorIndex(unsigned uIndex1, unsigned uIndex2) const;
107 float ComputeMetric(unsigned uIndex1, unsigned uIndex2) const;
112 void InsertMetric(unsigned uIndex1, unsigned uIndex2, float dMetric);
116 void DeleteMetric(unsigned uIndex1, unsigned uIndex2);
H A Dclust.cpp500 if (uIndex1 >= uNodeCount || uIndex2 >= uNodeCount) in VectorIndex()
501 Quit("DistVectorIndex(%u,%u) %u", uIndex1, uIndex2, uNodeCount); in VectorIndex()
503 if (uIndex1 >= uIndex2) in VectorIndex()
504 v = uIndex2 + (uIndex1*(uIndex1 - 1))/2; in VectorIndex()
506 v = uIndex1 + (uIndex2*(uIndex2 - 1))/2; in VectorIndex()
511 float Clust::GetDist(unsigned uIndex1, unsigned uIndex2) const in GetDist()
513 unsigned v = VectorIndex(uIndex1, uIndex2); in GetDist()
517 void Clust::SetDist(unsigned uIndex1, unsigned uIndex2, float dDist) in SetDist() argument
519 unsigned v = VectorIndex(uIndex1, uIndex2); in SetDist()
618 return ComputeMetricNearestNeighbor(uIndex1, uIndex2); in ComputeMetric()
[all …]
H A Ddistfunc.h12 virtual void SetDist(unsigned uIndex1, unsigned uIndex2, float dDist);
19 virtual float GetDist(unsigned uIndex1, unsigned uIndex2) const;
25 unsigned VectorIndex(unsigned uIndex, unsigned uIndex2) const;
H A Dupgma2.cpp58 static inline unsigned TriangleSubscript(unsigned uIndex1, unsigned uIndex2) in TriangleSubscript() argument
63 if (uIndex1 >= g_uLeafCount || uIndex2 >= g_uLeafCount) in TriangleSubscript()
64 Quit("TriangleSubscript(%u,%u) %u", uIndex1, uIndex2, g_uLeafCount); in TriangleSubscript()
67 if (uIndex1 >= uIndex2) in TriangleSubscript()
68 v = uIndex2 + (uIndex1*(uIndex1 - 1))/2; in TriangleSubscript()
70 v = uIndex1 + (uIndex2*(uIndex2 - 1))/2; in TriangleSubscript()
/dports/biology/muscle/muscle-3.8.1551/
H A Ddistfunc.cpp26 float DistFunc::GetDist(unsigned uIndex1, unsigned uIndex2) const in GetDist()
28 return m_Dists[VectorIndex(uIndex1, uIndex2)]; in GetDist()
52 void DistFunc::SetDist(unsigned uIndex1, unsigned uIndex2, float dDist) in SetDist() argument
54 m_Dists[VectorIndex(uIndex1, uIndex2)] = dDist; in SetDist()
55 m_Dists[VectorIndex(uIndex2, uIndex1)] = dDist; in SetDist()
58 unsigned DistFunc::VectorIndex(unsigned uIndex1, unsigned uIndex2) const in VectorIndex()
60 assert(uIndex1 < m_uCount && uIndex2 < m_uCount); in VectorIndex()
61 return uIndex1*m_uCount + uIndex2; in VectorIndex()
H A Dclust.h72 void SetDist(unsigned uIndex1, unsigned uIndex2, float dDist);
73 float GetDist(unsigned uIndex1, unsigned uIndex2) const;
102 unsigned VectorIndex(unsigned uIndex1, unsigned uIndex2) const;
107 float ComputeMetric(unsigned uIndex1, unsigned uIndex2) const;
112 void InsertMetric(unsigned uIndex1, unsigned uIndex2, float dMetric);
116 void DeleteMetric(unsigned uIndex1, unsigned uIndex2);
H A Dclust.cpp496 if (uIndex1 >= uNodeCount || uIndex2 >= uNodeCount) in VectorIndex()
497 Quit("DistVectorIndex(%u,%u) %u", uIndex1, uIndex2, uNodeCount); in VectorIndex()
499 if (uIndex1 >= uIndex2) in VectorIndex()
500 v = uIndex2 + (uIndex1*(uIndex1 - 1))/2; in VectorIndex()
502 v = uIndex1 + (uIndex2*(uIndex2 - 1))/2; in VectorIndex()
507 float Clust::GetDist(unsigned uIndex1, unsigned uIndex2) const in GetDist()
509 unsigned v = VectorIndex(uIndex1, uIndex2); in GetDist()
513 void Clust::SetDist(unsigned uIndex1, unsigned uIndex2, float dDist) in SetDist() argument
515 unsigned v = VectorIndex(uIndex1, uIndex2); in SetDist()
614 return ComputeMetricNearestNeighbor(uIndex1, uIndex2); in ComputeMetric()
[all …]
H A Ddistfunc.h12 virtual void SetDist(unsigned uIndex1, unsigned uIndex2, float dDist);
19 virtual float GetDist(unsigned uIndex1, unsigned uIndex2) const;
25 unsigned VectorIndex(unsigned uIndex, unsigned uIndex2) const;
H A Dupgma2.cpp53 static inline unsigned TriangleSubscript(unsigned uIndex1, unsigned uIndex2) in TriangleSubscript() argument
56 if (uIndex1 >= g_uLeafCount || uIndex2 >= g_uLeafCount) in TriangleSubscript()
57 Quit("TriangleSubscript(%u,%u) %u", uIndex1, uIndex2, g_uLeafCount); in TriangleSubscript()
60 if (uIndex1 >= uIndex2) in TriangleSubscript()
61 v = uIndex2 + (uIndex1*(uIndex1 - 1))/2; in TriangleSubscript()
63 v = uIndex1 + (uIndex2*(uIndex2 - 1))/2; in TriangleSubscript()
/dports/biology/clustal-omega/clustal-omega-1.2.4/src/clustal/
H A Dmuscle_upgma.c70 ulong TriangleSubscript(uint uIndex1, uint uIndex2);
152 TriangleSubscript(uint uIndex1, uint uIndex2) in TriangleSubscript() argument
156 if (uIndex1 >= g_uLeafCount || uIndex2 >= g_uLeafCount) in TriangleSubscript()
157 Log(&rLog, LOG_FATAL, "TriangleSubscript(%u,%u) %u", uIndex1, uIndex2, g_uLeafCount); in TriangleSubscript()
159 if (uIndex1 >= uIndex2) in TriangleSubscript()
160 v = uIndex2 + (uIndex1*(uIndex1 - 1))/2; in TriangleSubscript()
162 v = uIndex1 + (uIndex2*(uIndex2 - 1))/2; in TriangleSubscript()