Searched refs:umiFiltering (Results 1 – 5 of 5) sorted by relevance
401 if (umiFiltering.type[0]=="MultiGeneUMI") { in initialize()402 umiFiltering.MultiGeneUMI = true; in initialize()403 umiFiltering.yes = true; in initialize()404 } else if (umiFiltering.type[0]=="MultiGeneUMI_All") { in initialize()405 umiFiltering.MultiGeneUMI_All = true; in initialize()406 umiFiltering.yes = true; in initialize()407 } else if (umiFiltering.type[0]=="MultiGeneUMI_CR") { in initialize()408 umiFiltering.MultiGeneUMI_CR = true; in initialize()413 } else if (umiFiltering.type[0]=="-") { in initialize()416 …ause of fatal PARAMETERS error: unrecognized option in --soloUMIfiltering=" + umiFiltering.type[0] in initialize()
52 if (pSolo.umiFiltering.MultiGeneUMI) { in collapseUMIall()97 …if (pSolo.umiFiltering.MultiGeneUMI && umiGeneHash[rGU1[iR]][gID[iG]]==0) {//multigene UMI is not … in collapseUMIall()115 if (pSolo.umiFiltering.MultiGeneUMI_CR) { in collapseUMIall()184 if (pSolo.umiFiltering.MultiGeneUMI_CR) { in collapseUMIall()
42 if (pSolo.umiFiltering.MultiGeneUMI) { in collapseUMIall()64 if (pSolo.umiFiltering.MultiGeneUMI_All) { in collapseUMIall()101 …if (pSolo.umiFiltering.MultiGeneUMI && umiGeneMapCount[rGU1[iR]][gID[iG]]==0) {//multigene UMI is … in collapseUMIall()119 if (pSolo.umiFiltering.MultiGeneUMI_CR) { in collapseUMIall()188 if (pSolo.umiFiltering.MultiGeneUMI_CR) { in collapseUMIall()
173 } umiFiltering; variable
289 …ush_back(new ParameterInfoVector <string> (-1, -1, "soloUMIfiltering",&pSolo.umiFiltering.type)); in Parameters()