| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/utils/clipping/ |
| H A D | ClippingOp.java | 129 GATKRead unclipped = read.copy(); in applyRevertSoftClippedBases() local
131 unclipped.setCigar(unclippedCigar); in applyRevertSoftClippedBases()
145 unclipped.setPosition(unclipped.getContig(), 1); in applyRevertSoftClippedBases()
146 unclipped = applyHardClipBases(unclipped, 0, -newStart); in applyRevertSoftClippedBases()
150 if (!unclipped.isUnmapped()) { in applyRevertSoftClippedBases()
151 unclipped.setPosition(unclipped.getContig(), 1); in applyRevertSoftClippedBases()
154 return unclipped; in applyRevertSoftClippedBases()
156 unclipped.setPosition(unclipped.getContig(), newStart); in applyRevertSoftClippedBases()
157 return unclipped; in applyRevertSoftClippedBases()
|
| /dports/graphics/pastel/pastel-0.8.1/src/ |
| H A D | types.rs | 8 unclipped: Scalar, field
12 pub fn from(unclipped: Scalar) -> Hue { in from()
13 Hue { unclipped } in from()
19 if self.unclipped == 360.0 { in value()
20 self.unclipped in value()
22 mod_positive(self.unclipped, 360.0) in value()
|
| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/demos/howto/ |
| H A D | align_gaps_clipping.cpp.stdout | 20 3 clipped gapped => 6 unclipped gapped
21 6 unclipped gapped => 2 clipped gapped
23 3 clipped ungapped => 5 unclipped ungapped
24 5 unclipped ungapped => 3 clipped ungapped
27 4 unclipped ungapped => 7 unclipped gapped
|
| /dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/blink/renderer/platform/graphics/paint/ |
| H A D | float_clip_rect_test.cc | 67 FloatClipRect unclipped(large); in TEST_F() local
69 unclipped.Intersect(infinite); in TEST_F()
70 EXPECT_FALSE(unclipped.IsInfinite()); in TEST_F()
71 EXPECT_EQ(large, unclipped.Rect()); in TEST_F()
78 FloatClipRect unclipped(large); in TEST_F() local
80 ASSERT_TRUE(unclipped.InclusiveIntersect(infinite)); in TEST_F()
81 EXPECT_FALSE(unclipped.IsInfinite()); in TEST_F()
82 EXPECT_EQ(large, unclipped.Rect()); in TEST_F()
|
| /dports/www/qt5-webengine/qtwebengine-everywhere-src-5.15.2/src/3rdparty/chromium/third_party/blink/renderer/platform/graphics/paint/ |
| H A D | float_clip_rect_test.cc | 67 FloatClipRect unclipped(large); in TEST_F() local
69 unclipped.Intersect(infinite); in TEST_F()
70 EXPECT_FALSE(unclipped.IsInfinite()); in TEST_F()
71 EXPECT_EQ(large, unclipped.Rect()); in TEST_F()
78 FloatClipRect unclipped(large); in TEST_F() local
80 ASSERT_TRUE(unclipped.InclusiveIntersect(infinite)); in TEST_F()
81 EXPECT_FALSE(unclipped.IsInfinite()); in TEST_F()
82 EXPECT_EQ(large, unclipped.Rect()); in TEST_F()
|
| /dports/math/oleo/oleo-1.99.16/src/ |
| H A D | display.c | 60 if (cd->unclipped)
61 free (cd->unclipped);
116 if (((!new_unclipped && !cd->unclipped) in pr_display_cell()
117 || ((new_unclipped && cd->unclipped) in pr_display_cell()
126 if (cd->unclipped) in pr_display_cell()
128 free (cd->unclipped); in pr_display_cell()
129 cd->unclipped = 0; in pr_display_cell()
143 cd->unclipped = 0; in pr_display_cell()
146 cd->unclipped = ck_savestr (new_unclipped); in pr_display_cell()
303 cd->used_by = cd->unclipped ? cd : 0;
[all …]
|
| /dports/graphics/librsvg2-rust/librsvg-2.52.8/src/filters/ |
| H A D | bounds.rs | 34 pub unclipped: Rect, field
115 let unclipped = self.transform.transform_rect(&rect); in compute() localVariable
117 let clipped = unclipped.intersection(&effects_region).unwrap_or_default(); in compute()
119 Bounds { clipped, unclipped } in compute()
|
| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/manual/source/Tutorial/HowTo/Recipes/ |
| H A D | ClipAlignments.rst | 10 This page describes how to compute view and source positions in an unclipped and clipped :dox:`Alig…
22 #. Translate between view (gapped clipped) position and source (ungaped unclipped) position using t…
23 #. Translate between clipped and unclipped gapped position by adding/subtracting :dox:`Gaps#clipped…
24 #. Translate between clipped ungapped and unclipped ungapped position by adding/subtracting :dox:`G…
|
| /dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/utils/clipping/ |
| H A D | ReadClipperUnitTest.java | 186 final GATKRead unclipped = ReadClipper.revertSoftClippedBases(read); in testRevertSoftClippedBases() local
188 …assertUnclippedLimits(read, unclipped); … in testRevertSoftClippedBases()
194 Assert.assertEquals(unclipped.getStart(), expectedStart); in testRevertSoftClippedBases()
195 Assert.assertEquals(unclipped.getEnd(), expectedEnd); in testRevertSoftClippedBases()
197 Assert.assertEquals(read.getCigar().toString(), unclipped.getCigar().toString()); in testRevertSoftClippedBases()
208 final GATKRead unclipped = ReadClipper.revertSoftClippedBases(read); in testRevertSoftClippedBasesWithThreshold() local
210 …assertUnclippedLimits(read, unclipped); … in testRevertSoftClippedBasesWithThreshold()
212 Assert.assertNull(unclipped.getCigar().isValid(null, -1)); in testRevertSoftClippedBasesWithThreshold()
215 Assert.assertEquals(read.getCigar().toString(), unclipped.getCigar().toString()); in testRevertSoftClippedBasesWithThreshold()
|
| /dports/www/qt5-webengine/qtwebengine-everywhere-src-5.15.2/src/3rdparty/chromium/third_party/blink/renderer/core/paint/compositing/ |
| H A D | compositing_requirements_updater.cc | 73 OverlapMapContainer unclipped; member
106 overlap_stack_[overlap_stack_.size() - 2].unclipped.Add(bounds); in Add()
115 overlap_stack_.back().unclipped.OverlapsLayers(bounds); in OverlapsLayers()
135 overlap_stack_[overlap_stack_.size() - 2].unclipped.Unite( in FinishCurrentOverlapTestingContext()
136 overlap_stack_.back().unclipped); in FinishCurrentOverlapTestingContext()
|
| /dports/graphics/cairo/cairo-1.17.4/src/ |
| H A D | cairo-xlib-fallback-compositor.c | 60 unclipped (cairo_xlib_surface_t *xlib, cairo_clip_t *clip) in unclipped() function
82 extents->op <= CAIRO_OPERATOR_SOURCE && unclipped (xlib, extents->clip); in _cairo_xlib_shm_compositor_paint()
96 extents->op == CAIRO_OPERATOR_CLEAR && unclipped (xlib, extents->clip); in _cairo_xlib_shm_compositor_paint()
|
| /dports/www/firefox-esr/firefox-91.8.0/gfx/cairo/cairo/src/ |
| H A D | cairo-xlib-fallback-compositor.c | 60 unclipped (cairo_xlib_surface_t *xlib, cairo_clip_t *clip) in unclipped() function
82 extents->op <= CAIRO_OPERATOR_SOURCE && unclipped (xlib, extents->clip); in _cairo_xlib_shm_compositor_paint()
96 extents->op == CAIRO_OPERATOR_CLEAR && unclipped (xlib, extents->clip); in _cairo_xlib_shm_compositor_paint()
|
| /dports/www/firefox/firefox-99.0/gfx/cairo/cairo/src/ |
| H A D | cairo-xlib-fallback-compositor.c | 60 unclipped (cairo_xlib_surface_t *xlib, cairo_clip_t *clip) in unclipped() function
82 extents->op <= CAIRO_OPERATOR_SOURCE && unclipped (xlib, extents->clip); in _cairo_xlib_shm_compositor_paint()
96 extents->op == CAIRO_OPERATOR_CLEAR && unclipped (xlib, extents->clip); in _cairo_xlib_shm_compositor_paint()
|
| /dports/mail/thunderbird/thunderbird-91.8.0/gfx/cairo/cairo/src/ |
| H A D | cairo-xlib-fallback-compositor.c | 60 unclipped (cairo_xlib_surface_t *xlib, cairo_clip_t *clip) in unclipped() function
82 extents->op <= CAIRO_OPERATOR_SOURCE && unclipped (xlib, extents->clip); in _cairo_xlib_shm_compositor_paint()
96 extents->op == CAIRO_OPERATOR_CLEAR && unclipped (xlib, extents->clip); in _cairo_xlib_shm_compositor_paint()
|
| /dports/www/qt5-webengine/qtwebengine-everywhere-src-5.15.2/src/3rdparty/chromium/third_party/webrtc/modules/desktop_capture/win/ |
| H A D | screen_capturer_win_magnifier.h | 60 RECT unclipped,
79 RECT unclipped,
|
| /dports/net-im/tg_owt/tg_owt-d578c76/src/modules/desktop_capture/win/ |
| H A D | screen_capturer_win_magnifier.h | 60 RECT unclipped,
79 RECT unclipped,
|
| /dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/webrtc/modules/desktop_capture/win/ |
| H A D | screen_capturer_win_magnifier.h | 60 RECT unclipped,
79 RECT unclipped,
|
| /dports/www/firefox/firefox-99.0/third_party/libwebrtc/modules/desktop_capture/win/ |
| H A D | screen_capturer_win_magnifier.h | 60 RECT unclipped,
79 RECT unclipped,
|
| /dports/mail/thunderbird/thunderbird-91.8.0/third_party/libwebrtc/webrtc/modules/desktop_capture/win/ |
| H A D | screen_capturer_win_magnifier.h | 60 RECT unclipped,
79 RECT unclipped,
|
| /dports/lang/spidermonkey60/firefox-60.9.0/media/webrtc/trunk/webrtc/modules/desktop_capture/win/ |
| H A D | screen_capturer_win_magnifier.h | 66 RECT unclipped,
85 RECT unclipped,
|
| /dports/www/firefox-legacy/firefox-52.8.0esr/media/webrtc/trunk/webrtc/modules/desktop_capture/win/ |
| H A D | screen_capturer_win_magnifier.h | 59 RECT unclipped,
78 RECT unclipped,
|
| /dports/www/firefox-esr/firefox-91.8.0/third_party/libwebrtc/webrtc/modules/desktop_capture/win/ |
| H A D | screen_capturer_win_magnifier.h | 60 RECT unclipped,
79 RECT unclipped,
|
| /dports/lang/spidermonkey78/firefox-78.9.0/media/webrtc/trunk/webrtc/modules/desktop_capture/win/ |
| H A D | screen_capturer_win_magnifier.h | 60 RECT unclipped,
79 RECT unclipped,
|
| /dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/blink/renderer/core/paint/compositing/ |
| H A D | compositing_requirements_updater.cc | 72 OverlapMapContainer unclipped; member
107 overlap_stack_[overlap_stack_.size() - 2].unclipped.Add(bounds); in Add()
116 overlap_stack_.back().unclipped.OverlapsLayers(bounds); in OverlapsLayers()
136 overlap_stack_[overlap_stack_.size() - 2].unclipped.Unite( in FinishCurrentOverlapTestingContext()
137 overlap_stack_.back().unclipped); in FinishCurrentOverlapTestingContext()
|
| /dports/converters/wkhtmltopdf/qt-5db36ec/tests/auto/lancelot/scripts/ |
| H A D | pixmap_subpixel.qps | 7 # Pixmaps at 0.1 offset, unclipped
54 # Tiled pixmaps at 0.1 offsets, unclipped
|