| /dports/java/java3d/java3d-1.5.2/j3d-core/src/classes/share/javax/media/j3d/ |
| H A D | Locale.java | 89 this.universe = universe; in Locale()
105 this.universe = universe; in Locale()
119 this.universe = universe; in Locale()
235 createMessage.universe = universe; in doAddBranchGraph()
247 createMessage.universe = universe; in doAddBranchGraph()
257 createMessage.universe = universe; in doAddBranchGraph()
362 destroyMessage.universe = universe; in doRemoveBranchGraph()
395 destroyMessage.universe = universe; in doRemoveBranchGraph()
469 destroyMessage.universe = universe; in doReplaceBranchGraph()
479 destroyMessage.universe = universe; in doReplaceBranchGraph()
[all …]
|
| /dports/editors/e93/e93/ |
| H A D | carray.c | 133 universe->totalElements-=numElements; in DeleteWithinArrayChunk()
231 …ta[offset*universe->elementSize]),&(secondChunk->data[(offset+numElements-universe->maxElements)*u… in InsertWithRoomInTwoChunks()
256 …numChunks=(numElements-(universe->maxElements-(chunk->totalElements))+universe->maxElements-1)/uni… in InsertWithNoRoom()
317 …st(&startChunk,&endChunk,(numElements+universe->maxElements-1)/universe->maxElements,universe->max… in InsertWithNoChunks()
322 universe->lastChunkHeader=endChunk; in InsertWithNoChunks()
323 universe->totalElements=numElements; in InsertWithNoChunks()
329 numToFill=universe->maxElements; in InsertWithNoChunks()
418 universe->firstChunkHeader=universe->lastChunkHeader=(ARRAY_CHUNK_HEADER *)NULL; in InitArrayUniverse()
419 universe->totalElements=0; in InitArrayUniverse()
420 universe->maxElements=maxElements; in InitArrayUniverse()
[all …]
|
| H A D | text.c | 247 universe->cacheBytes=universe->totalBytes-universe->lastChunkHeader->totalBytes; in PositionToChunkPositionPastEnd()
248 universe->cacheLines=universe->totalLines-universe->lastChunkHeader->totalLines; in PositionToChunkPositionPastEnd()
321 universe->cacheBytes=universe->totalBytes-universe->lastChunkHeader->totalBytes; in PositionToLinePosition()
322 universe->cacheLines=currentLine=universe->totalLines-universe->lastChunkHeader->totalLines; in PositionToLinePosition()
427 if(line>universe->totalLines||!(universe->firstChunkHeader)) in LineToChunkPosition()
431 universe->cacheBytes=universe->totalBytes-universe->lastChunkHeader->totalBytes; in LineToChunkPosition()
432 universe->cacheLines=currentLine=universe->totalLines-universe->lastChunkHeader->totalLines; in LineToChunkPosition()
1229 *universe; in OpenTextUniverse() local
1233 …universe->firstChunkHeader=universe->lastChunkHeader=universe->cacheChunkHeader=(CHUNK_HEADER *)NU… in OpenTextUniverse()
1238 return(universe); in OpenTextUniverse()
[all …]
|
| H A D | style.c | 78 DeleteSARange(&universe->styleArray,startPosition,numElements); in DeleteStyleRange()
149 CoalescePosition(universe,startPosition); in SetStyleRange()
150 CoalescePosition(universe,startPosition+numElements); in SetStyleRange()
165 return(SetStyleRange(universe,position,1,style)); in SetStyleAtPosition()
221 void CloseStyleUniverse(STYLE_UNIVERSE *universe) in CloseStyleUniverse() argument
224 UnInitSA(&(universe->styleArray)); in CloseStyleUniverse()
225 MDisposePtr(universe); in CloseStyleUniverse()
233 *universe; in OpenStyleUniverse() local
237 if(InitSA(&(universe->styleArray),sizeof(STYLE_ELEMENT))) in OpenStyleUniverse()
239 return(universe); in OpenStyleUniverse()
[all …]
|
| H A D | select.c | 43 void DeleteAllSelections(SELECTION_UNIVERSE *universe) in DeleteAllSelections() argument
46 DeleteSARange(&universe->selectionArray,0,universe->selectionArray.totalElements); in DeleteAllSelections()
162 return(IsSAEmpty(&universe->selectionArray)); in IsSelectionEmpty()
178 return(universe->cursorPosition); in GetSelectionCursorPosition()
184 universe->cursorPosition=position; in SetSelectionCursorPosition()
208 universe->cursorPosition=(universe->cursorPosition+newEndOffset)-oldEndOffset; in AdjustSelectionsForChange()
390 UnInitSA(&(universe->selectionArray)); in CloseSelectionUniverse()
391 MDisposePtr(universe); in CloseSelectionUniverse()
399 *universe; in OpenSelectionUniverse() local
406 return(universe); in OpenSelectionUniverse()
[all …]
|
| /dports/science/py-MDAnalysisTests/MDAnalysisTests-0.19.2/MDAnalysisTests/coordinates/ |
| H A D | test_trz.py | 44 def universe(self): member in TestTRZReader
48 U = universe
60 universe.trajectory[2]
69 universe.trajectory[3]
74 universe.trajectory[4]
76 universe.trajectory[3]
81 universe.trajectory[0]
83 universe.trajectory[3]
141 def universe(self): member in TestTRZWriter
149 t = universe.trajectory
[all …]
|
| H A D | test_trj.py | 39 def universe(self): member in _TRJReaderTest
42 def test_load_prm(self, universe): argument
46 def test_n_atoms(self, universe): argument
50 def test_n_frames(self, universe): argument
81 def test_rewind(self, universe): argument
82 trj = universe.trajectory
99 universe.trajectory.next()
100 universe.trajectory.next()
103 universe.trajectory[0]
107 universe.trajectory[2]
[all …]
|
| H A D | test_chainreader.py | 43 def universe(self): member in TestChainReader
62 universe.trajectory.rewind()
63 universe.trajectory.next()
83 universe.trajectory[-1]
101 def test_frame(self, universe): argument
102 universe.trajectory[0]
106 universe.trajectory[99]
110 def test_time(self, universe): argument
121 W.write(universe)
178 universe = mda.Universe(
[all …]
|
| H A D | test_xdr.py | 90 def universe(self): member in _GromacsReader
105 universe.trajectory.next()
113 universe.trajectory[-1]
164 def test_dt(self, universe): argument
183 universe.trajectory[4]
289 def universe(self): member in _XDRNoConversion
329 def universe(self): member in _GromacsWriter
344 with Writer(outfile, universe.atoms.n_atoms, dt=universe.trajectory.dt) as W:
392 with Writer(outfile, universe.atoms.n_atoms, dt=universe.trajectory.dt) as W:
412 with Writer(outfile, universe.atoms.n_atoms, dt=universe.trajectory.dt) as W:
[all …]
|
| H A D | test_dms.py | 37 def universe(self): member in TestDMSReader
41 def ts(self, universe): argument
42 return universe.trajectory.ts
50 def test_number_of_coords(self, universe): argument
55 def test_coords_atom_0(self, universe): argument
64 def test_n_frames(self, universe): argument
68 def test_time(self, universe): argument
72 def test_frame(self, universe): argument
76 def test_frame_index_0(self, universe): argument
77 universe.trajectory[0]
[all …]
|
| /dports/science/py-MDAnalysisTests/MDAnalysisTests-0.19.2/MDAnalysisTests/core/ |
| H A D | test_atomselections.py | 55 def universe(self): member in TestSelectionsCHARMM
65 def test_segid(self, universe): argument
167 def test_and(self, universe): argument
171 def test_or(self, universe): argument
330 def universe(self): member in TestSelectionsAMBER
349 def universe(self): member in TestSelectionsNAMD
375 def universe(self): member in TestSelectionsGRO
417 def universe(): member in TestSelectionsTPR
451 def universe(self): member in TestSelectionsNucleicAcids
831 def universe(): member in TestSelectionErrors
[all …]
|
| H A D | test_residuegroup.py | 94 def universe(self): member in TestResidueGroup
98 def rg(self, universe): argument
99 return universe.residues
104 rg = universe.atoms.residues
129 def test_set_resids(self, universe): argument
169 rg = universe.residues[:3]
178 rg = universe.residues[:3]
187 rg = universe.residues[:3]
195 rg = universe.residues[:3]
206 rg = universe.residues[:3]
[all …]
|
| /dports/science/py-MDAnalysisTests/MDAnalysisTests-0.19.2/MDAnalysisTests/utils/ |
| H A D | test_nuclinfo.py | 46 def universe(): function
50 def test_wc_pair(universe): argument
51 seg1 = universe.residues[3].atoms.segids[0]
52 seg2 = universe.residues[19].atoms.segids[0]
57 def test_major_pair(universe): argument
58 seg1 = universe.residues[3].atoms.segids[0]
64 def test_minor_pair(universe): argument
65 seg1 = universe.residues[3].atoms.segids[0]
72 def test_torsions(universe): argument
82 def test_hydroxyl(universe): argument
[all …]
|
| /dports/science/py-MDAnalysisTests/MDAnalysisTests-0.19.2/MDAnalysisTests/analysis/ |
| H A D | test_waterdynamics.py | 40 def universe(): function
44 def test_HydrogenBondLifetimes(universe): argument
46 universe, SELECTION1, SELECTION1, 0, 5, 3)
51 def test_WaterOrientationalRelaxation(universe): argument
53 universe, SELECTION1, 0, 5, 2)
61 universe, SELECTION2, 0, 5, 2)
66 def test_AngularDistribution(universe): argument
74 def test_MeanSquareDisplacement(universe): argument
83 universe, SELECTION2, 0, 10, 2)
88 def test_SurvivalProbability_t0tf(universe): argument
[all …]
|
| H A D | test_rms.py | 77 assert p_first.universe.trajectory.ts.frame != p_last.universe.trajectory.ts.frame
159 def universe(self): member in TestRMSD
255 weights = universe.atoms.masses
265 universe, weights=42)
275 universe, weights=universe.atoms.masses[:-1])
294 universe,
295 reference=universe,
310 def test_mass_mismatches(self, universe): argument
334 def universe(self): member in TestRMSF
337 def test_rmsf(self, universe): argument
[all …]
|
| H A D | test_dihedrals.py | 76 def universe(self): member in TestRamachandran
83 def test_ramachandran(self, universe, rama_ref_array): argument
106 def test_outside_protein_length(self, universe): argument
110 def test_protein_ends(self, universe): argument
119 def test_plot(self, universe): argument
127 def universe(self): member in TestJanin
134 def test_janin(self, universe, janin_ref_array): argument
149 def test_janin_residue_selections(self, universe): argument
157 def test_outside_protein_length(self, universe): argument
161 def test_remove_residues(self, universe): argument
[all …]
|
| H A D | test_align.py | 77 def universe(): member in TestGetMatchingAtoms
95 mobile = universe.select_atoms(selection)
135 def universe(): member in TestAlign
143 def test_rmsd(self, universe, reference): argument
145 bb = universe.select_atoms('backbone')
147 universe.trajectory[-1]
162 A = universe.trajectory[0]
171 A = universe.trajectory[0]
181 ca = universe.select_atoms('name CA')
259 ca = universe.select_atoms('name CA')
[all …]
|
| /dports/science/liggghts/LIGGGHTS-PUBLIC-3.8.0-26-g6e873439/src/ |
| H A D | lammps.cpp | 276 if (universe->existflag == 0) universe->add_world(NULL); in LAMMPS()
300 if (universe->me == 0) { in LAMMPS()
330 if (universe->me > 0) { in LAMMPS()
349 if (universe->me == 0) { in LAMMPS()
359 if (universe->me == 0) { in LAMMPS()
372 MPI_Comm_split(universe->uworld,universe->iworld,0,&world); in LAMMPS()
450 fprintf(universe->uscreen,"LIGGGHTS (%s)\n",universe->version); in LAMMPS()
455 fprintf(universe->ulogfile,"LIGGGHTS (%s)\n",universe->version); in LAMMPS()
586 if (universe->ulogfile) fclose(universe->ulogfile); in ~LAMMPS()
587 if (universe->uthermofile) fclose(universe->uthermofile); in ~LAMMPS()
[all …]
|
| H A D | error.cpp | 92 if (universe->uscreen) fprintf(universe->uscreen, in universe_all()
94 if (universe->ulogfile) fprintf(universe->ulogfile, in universe_all()
100 if (universe->uscreen) fprintf(universe->uscreen, in universe_all()
102 if (universe->ulogfile) fprintf(universe->ulogfile, in universe_all()
112 if (universe->ulogfile) fclose(universe->ulogfile); in universe_all()
125 if (universe->uscreen) in universe_one()
132 if (universe->uscreen) fprintf(universe->uscreen, in universe_one()
146 if (universe->uscreen) in universe_warn()
181 if (universe->nworlds > 1) MPI_Abort(universe->uworld,1); in all()
229 if (universe->nworlds > 1) MPI_Abort(universe->uworld,1); in fix_error()
[all …]
|
| /dports/science/py-MDAnalysis/MDAnalysis-0.19.2/MDAnalysis/analysis/ |
| H A D | nuclinfo.py | 247 def phase_cp(universe, seg, i): argument
318 def phase_as(universe, seg, i): argument
387 def tors(universe, seg, i): argument
466 def tors_alpha(universe, seg, i): argument
496 def tors_beta(universe, seg, i): argument
526 def tors_gamma(universe, seg, i): argument
586 def tors_eps(universe, seg, i): argument
616 def tors_zeta(universe, seg, i): argument
646 def tors_chi(universe, seg, i): argument
681 def hydroxyl(universe, seg, i): argument
[all …]
|
| /dports/science/sparta/sparta-20Oct2021/src/ |
| H A D | sparta.cpp | 81 universe->existflag = 1; in SPARTA()
180 if (universe->existflag == 0) universe->add_world(NULL); in SPARTA()
204 if (universe->me == 0) { in SPARTA()
227 if (universe->me > 0) { in SPARTA()
266 MPI_Comm_split(universe->uworld,universe->iworld,0,&world); in SPARTA()
330 fprintf(universe->uscreen,"SPARTA (%s)\n",universe->version); in SPARTA()
332 universe->nworlds); in SPARTA()
335 fprintf(universe->ulogfile,"SPARTA (%s)\n",universe->version); in SPARTA()
337 universe->nworlds); in SPARTA()
446 if (universe->ulogfile) fclose(universe->ulogfile); in ~SPARTA()
[all …]
|
| /dports/ports-mgmt/pkg/pkg-1.17.5/libpkg/ |
| H A D | pkg_jobs_universe.c | 61 if (!IS_DELETE(universe->j)) in pkg_jobs_universe_get_local()
136 universe->j->reponame)) == NULL) in pkg_jobs_universe_get_remote()
161 pkg_validate(pkg, universe->j->db); in pkg_jobs_universe_add_pkg()
221 universe->nitems++; in pkg_jobs_universe_add_pkg()
502 buf, universe->j->reponame); in pkg_jobs_universe_process_shlibs()
548 buf, universe->j->reponame); in pkg_jobs_universe_process_provides_requires()
577 job_flags = universe->j->flags; in pkg_jobs_universe_process_item()
826 HASH_DEL(universe->items, un); in pkg_jobs_universe_free()
844 universe->j = j; in pkg_jobs_universe_new()
846 return (universe); in pkg_jobs_universe_new()
[all …]
|
| /dports/net-mgmt/prometheus2/prometheus-2.30.3/vendor/github.com/influxdata/influxdb/flux/stdlib/influxdata/influxdb/ |
| H A D | rules.go | 699 universe.CountKind,
700 universe.SumKind,
701 universe.MinKind,
702 universe.MaxKind,
703 universe.MeanKind,
704 universe.FirstKind,
705 universe.LastKind,
894 universe.SumKind,
896 universe.LastKind,
897 universe.MinKind,
[all …]
|
| /dports/biology/migrate/migrate-3.6.11/src/ |
| H A D | heating.c | 339 universe[i]->averageheat = 1./universe[i]->heat; in adjust_temperatures()
353 universe[i]->averageheat += (1./(universe[i]->heat * corrsum )); in adjust_temperatures()
355 delta[i-1] = 1./universe[i]->heat - 1./universe[i-1]->heat; in adjust_temperatures()
369 universe[0]->heat = 1.; in adjust_temperatures()
373 universe[i]->heat = 1./(1./universe[i-1]->heat + delta[i-1]); in adjust_temperatures()
374 universe[i]->treeswapcount=0; in adjust_temperatures()
395 universe[i]->averageheat = 1./universe[i]->heat; in adjust_temperatures_bounded()
407 …intf(stdout,"\n%i> chain 1: %f %f %li\n",myID, 1./universe[0]->heat,universe[0]->averageheat, univ… in adjust_temperatures_bounded()
412 …universe[i]->averageheat += HEATCHECKINTERVAL * (1./universe[i]->heat - universe[i]->averageheat) … in adjust_temperatures_bounded()
422 universe[0]->heat = 1.; in adjust_temperatures_bounded()
[all …]
|
| /dports/devel/ppl/ppl-1.2/tests/Polyhedron/ |
| H A D | universe1.cc | 33 bool universe = ph.is_universe(); in test01() local
40 return universe; in test01()
54 bool universe = ph.is_universe(); in test02() local
61 return !universe; in test02()
77 bool universe = ph.is_universe(); in test03() local
84 return !universe; in test03()
101 bool universe = ph.is_universe(); in test04() local
108 return !universe; in test04()
122 bool universe = ph.is_universe(); in test05() local
129 return !universe; in test05()
[all …]
|