| /dports/biology/py-deeptools/deepTools-3.5.1/deeptools/ |
| H A D | bamHandler.py | 11 unmapped = 0
14 unmapped += 1
21 unmapped += 1
22 return mapped, unmapped, chrom
35 unmapped = sum([x[1] for x in res])
42 unmapped += bam.count("*")
44 return mapped, unmapped, stats
85 mapped, unmapped, stats = getMappingStats(bam, nThreads)
88 unmapped = bam.unmapped
92 … stats = {chrom.contig: [chrom.mapped, chrom.unmapped] for chrom in bam.get_index_statistics()}
[all …]
|
| /dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/utils/ |
| H A D | GenomeLocUnitTest.java | 80 GenomeLoc unmapped = GenomeLoc.UNMAPPED; in testEndpointSpanUnmapped() local
81 twoOne.endpointSpan(unmapped); in testEndpointSpanUnmapped()
95 GenomeLoc unmapped = GenomeLoc.UNMAPPED; in testUnmappedSort() local
97 List<GenomeLoc> unmappedOnly = Arrays.asList(unmapped); in testUnmappedSort()
102 List<GenomeLoc> chr1Presorted = Arrays.asList(chr1,unmapped); in testUnmappedSort()
107 List<GenomeLoc> chr1Inverted = Arrays.asList(unmapped,chr1); in testUnmappedSort()
131 GenomeLoc unmapped = GenomeLoc.UNMAPPED; in testUnmappedMerge() local
133 List<GenomeLoc> oneUnmappedOnly = Arrays.asList(unmapped); in testUnmappedMerge()
138 List<GenomeLoc> twoUnmapped = Arrays.asList(unmapped,unmapped); in testUnmappedMerge()
143 List<GenomeLoc> twoUnmappedAtEnd = Arrays.asList(chr1,unmapped,unmapped); in testUnmappedMerge()
[all …]
|
| /dports/biology/bbmap/bbmap/current/jgi/ |
| H A D | SplitSam4Way.java | 61 …TextStreamWriter unmapped=("null".equalsIgnoreCase(funmapped) ? null : new TextStreamWriter(funmap… in SplitSam4Way() local
66 if(unmapped!=null){unmapped.start();} in SplitSam4Way()
73 if(unmapped!=null){unmapped.println(line);} in SplitSam4Way()
81 if(unmapped!=null){unmapped.println(line);} in SplitSam4Way()
103 if(unmapped!=null){unmapped.poisonAndWait();} in SplitSam4Way()
|
| /dports/audio/lvtk/lvtk-2.0.0rc1-14-g1028f69/lvtk/ |
| H A D | uri_directory.hpp | 66 unmapped [urid] = std::string (key); in map()
86 return unmapped.find (urid) != unmapped.end(); in contains()
96 return (const char*) unmapped [urid].c_str(); in unmap()
104 unmapped.clear(); in clear()
114 std::map<uint32_t, std::string> unmapped; member in lvtk::URIDirectory
|
| /dports/net-p2p/go-ethereum/go-ethereum-1.10.14/vendor/github.com/docker/docker/builder/dockerfile/ |
| H A D | internals_linux_test.go | 37 unmapped := &idtools.IDMappings{}
60 idMapping: unmapped,
66 idMapping: unmapped,
84 idMapping: unmapped,
117 idMapping: unmapped,
123 idMapping: unmapped,
129 idMapping: unmapped,
|
| /dports/benchmarks/stress-ng/stress-ng-0.13.09/ |
| H A D | stress-mincore.c | 93 uint8_t *mapped, *unmapped, *fdmapped; in stress_mincore() local
111 unmapped = mmap(NULL, page_size, PROT_READ | PROT_WRITE, in stress_mincore()
113 if (unmapped != MAP_FAILED) { in stress_mincore()
114 if (munmap(unmapped, page_size) < 0) in stress_mincore()
115 unmapped = MAP_FAILED; in stress_mincore()
184 if (unmapped != MAP_FAILED) { in stress_mincore()
186 ret = shim_mincore((void *)unmapped, page_size, vec); in stress_mincore()
189 args->name, (void *)unmapped); in stress_mincore()
|
| H A D | stress-remap-file-pages.c | 127 uint8_t *unmapped, *mapped; in stress_remap() local
144 unmapped = stress_get_umapped_addr(page_size); in stress_remap()
212 if (unmapped) { in stress_remap()
213 ret = remap_file_pages((void *)unmapped, page_size, 0, 0, 0); in stress_remap()
217 ret = remap_file_pages((void *)unmapped, page_size, 0, 0, ~0); in stress_remap()
221 ret = remap_file_pages((void *)unmapped, page_size, ~0, order[0], 0); in stress_remap()
247 if (unmapped) in stress_remap()
248 (void)munmap((void *)unmapped, page_size); in stress_remap()
|
| /dports/multimedia/libv4l/linux-5.13-rc2/drivers/gpu/drm/msm/ |
| H A D | msm_gem_shrinker.c | 176 unsigned idx, unmapped = 0; in msm_gem_shrinker_vmap() local
178 for (idx = 0; mm_lists[idx] && unmapped < vmap_shrink_limit; idx++) { in msm_gem_shrinker_vmap()
179 unmapped += scan(priv, vmap_shrink_limit - unmapped, in msm_gem_shrinker_vmap()
183 *(unsigned long *)ptr += unmapped; in msm_gem_shrinker_vmap()
185 if (unmapped > 0) in msm_gem_shrinker_vmap()
186 trace_msm_gem_purge_vmaps(unmapped); in msm_gem_shrinker_vmap()
|
| /dports/multimedia/v4l_compat/linux-5.13-rc2/drivers/gpu/drm/msm/ |
| H A D | msm_gem_shrinker.c | 176 unsigned idx, unmapped = 0; in msm_gem_shrinker_vmap() local
178 for (idx = 0; mm_lists[idx] && unmapped < vmap_shrink_limit; idx++) { in msm_gem_shrinker_vmap()
179 unmapped += scan(priv, vmap_shrink_limit - unmapped, in msm_gem_shrinker_vmap()
183 *(unsigned long *)ptr += unmapped; in msm_gem_shrinker_vmap()
185 if (unmapped > 0) in msm_gem_shrinker_vmap()
186 trace_msm_gem_purge_vmaps(unmapped); in msm_gem_shrinker_vmap()
|
| /dports/multimedia/v4l-utils/linux-5.13-rc2/drivers/gpu/drm/msm/ |
| H A D | msm_gem_shrinker.c | 176 unsigned idx, unmapped = 0; in msm_gem_shrinker_vmap() local
178 for (idx = 0; mm_lists[idx] && unmapped < vmap_shrink_limit; idx++) { in msm_gem_shrinker_vmap()
179 unmapped += scan(priv, vmap_shrink_limit - unmapped, in msm_gem_shrinker_vmap()
183 *(unsigned long *)ptr += unmapped; in msm_gem_shrinker_vmap()
185 if (unmapped > 0) in msm_gem_shrinker_vmap()
186 trace_msm_gem_purge_vmaps(unmapped); in msm_gem_shrinker_vmap()
|
| /dports/x11/xfce4-dashboard/xfdashboard-0.8.1/data/themes/xfdashboard-auber/ |
| H A D | xfdashboard-auber.css | 7 unmapped-window-icon-x-fill: false;
8 unmapped-window-icon-y-fill: false;
9 unmapped-window-icon-x-align: 0.5;
10 unmapped-window-icon-y-align: 0.5;
11 unmapped-window-icon-x-scale: 2.0;
12 unmapped-window-icon-y-scale: 2.0;
13 unmapped-window-icon-anchor-point: center;
|
| /dports/x11/xfce4-dashboard/xfdashboard-0.8.1/data/themes/xfdashboard-blue/ |
| H A D | xfdashboard-blue.css | 7 unmapped-window-icon-x-fill: false;
8 unmapped-window-icon-y-fill: false;
9 unmapped-window-icon-x-align: 0.5;
10 unmapped-window-icon-y-align: 0.5;
11 unmapped-window-icon-x-scale: 2.0;
12 unmapped-window-icon-y-scale: 2.0;
13 unmapped-window-icon-anchor-point: center;
|
| /dports/x11/xfce4-dashboard/xfdashboard-0.8.1/data/themes/xfdashboard-dark/ |
| H A D | xfdashboard-dark.css | 7 unmapped-window-icon-x-fill: false;
8 unmapped-window-icon-y-fill: false;
9 unmapped-window-icon-x-align: 0.5;
10 unmapped-window-icon-y-align: 0.5;
11 unmapped-window-icon-x-scale: 2.0;
12 unmapped-window-icon-y-scale: 2.0;
13 unmapped-window-icon-anchor-point: center;
|
| /dports/x11/xfce4-dashboard/xfdashboard-0.8.1/data/themes/xfdashboard-mint/ |
| H A D | xfdashboard-mint.css | 7 unmapped-window-icon-x-fill: false;
8 unmapped-window-icon-y-fill: false;
9 unmapped-window-icon-x-align: 0.5;
10 unmapped-window-icon-y-align: 0.5;
11 unmapped-window-icon-x-scale: 2.0;
12 unmapped-window-icon-y-scale: 2.0;
13 unmapped-window-icon-anchor-point: center;
|
| /dports/x11/xfce4-dashboard/xfdashboard-0.8.1/data/themes/xfdashboard-moranga/ |
| H A D | xfdashboard-moranga.css | 7 unmapped-window-icon-x-fill: false;
8 unmapped-window-icon-y-fill: false;
9 unmapped-window-icon-x-align: 0.5;
10 unmapped-window-icon-y-align: 0.5;
11 unmapped-window-icon-x-scale: 2.0;
12 unmapped-window-icon-y-scale: 2.0;
13 unmapped-window-icon-anchor-point: center;
|
| /dports/x11/xfce4-dashboard/xfdashboard-0.8.1/data/themes/xfdashboard-wine/ |
| H A D | xfdashboard-wine.css | 7 unmapped-window-icon-x-fill: false;
8 unmapped-window-icon-y-fill: false;
9 unmapped-window-icon-x-align: 0.5;
10 unmapped-window-icon-y-align: 0.5;
11 unmapped-window-icon-x-scale: 2.0;
12 unmapped-window-icon-y-scale: 2.0;
13 unmapped-window-icon-anchor-point: center;
|
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objects/seq/unit_test/mapper_test_data/ |
| H A D | truncatedmix.asn | 25 -- Plus, unmapped ranges on the left: original
43 -- Plus, direct, unmapped ranges on the left: expected
57 -- Plus, reversed, unmapped ranges on the left: expected
74 -- Plus, unmapped ranges on the right: original
92 -- Plus, direct, unmapped ranges on the right: expected
106 -- Plus, reversed, unmapped ranges on the right: expected
211 -- Minus, unmapped ranges on the left: original
232 -- Minus, direct, unmapped ranges on the left: expected
248 -- Minus, reversed, unmapped ranges on the left: expected
265 -- Minus, unmapped ranges on the right: original
[all …]
|
| /dports/x11-wm/sawfish/sawfish_1.13.0/lisp/sawfish/wm/ext/ |
| H A D | audio-events.jl | 51 ;; maximized, unmaximized, mapped, unmapped, mapped-transient,
52 ;; unmapped-transient, switch-workspace, move-viewport, focused,
62 (unmapped . "unmap.wav")
64 (unmapped-transient . "unmap-transient.wav")
73 mapped unmapped
74 mapped-transient unmapped-transient
128 (defun audio-unmapped-fun (w)
130 'unmapped-transient 'unmapped) w))
132 (add-hook 'unmap-notify-hook audio-unmapped-fun)
|
| /dports/databases/timescaledb-backup/timescaledb-backup-0.1.1/vendor/github.com/docker/docker/builder/dockerfile/ |
| H A D | internals_linux_test.go | 38 unmapped := &idtools.IdentityMapping{}
64 idMapping: unmapped,
72 idMapping: unmapped,
96 idMapping: unmapped,
137 idMapping: unmapped,
145 idMapping: unmapped,
153 idMapping: unmapped,
|
| /dports/databases/cayley/cayley-0.7.5-2-gcf576ba/vendor/github.com/docker/docker/builder/dockerfile/ |
| H A D | internals_linux_test.go | 38 unmapped := &idtools.IdentityMapping{}
64 idMapping: unmapped,
72 idMapping: unmapped,
96 idMapping: unmapped,
137 idMapping: unmapped,
145 idMapping: unmapped,
153 idMapping: unmapped,
|
| /dports/sysutils/istio/istio-1.6.7/vendor/github.com/docker/docker/builder/dockerfile/ |
| H A D | internals_linux_test.go | 38 unmapped := &idtools.IdentityMapping{}
64 idMapping: unmapped,
72 idMapping: unmapped,
96 idMapping: unmapped,
137 idMapping: unmapped,
145 idMapping: unmapped,
153 idMapping: unmapped,
|
| /dports/sysutils/docker/docker-ce-18.09.5/components/engine/builder/dockerfile/ |
| H A D | internals_linux_test.go | 38 unmapped := &idtools.IdentityMapping{}
64 idMapping: unmapped,
72 idMapping: unmapped,
96 idMapping: unmapped,
137 idMapping: unmapped,
145 idMapping: unmapped,
153 idMapping: unmapped,
|
| /dports/net-mgmt/promscale/promscale-0.6.2/vendor/github.com/docker/docker/builder/dockerfile/ |
| H A D | internals_linux_test.go | 38 unmapped := &idtools.IdentityMapping{}
64 idMapping: unmapped,
72 idMapping: unmapped,
96 idMapping: unmapped,
137 idMapping: unmapped,
145 idMapping: unmapped,
153 idMapping: unmapped,
|
| /dports/net-mgmt/prometheus2/prometheus-2.30.3/vendor/github.com/docker/docker/builder/dockerfile/ |
| H A D | internals_linux_test.go | 38 unmapped := &idtools.IdentityMapping{}
64 idMapping: unmapped,
72 idMapping: unmapped,
96 idMapping: unmapped,
137 idMapping: unmapped,
145 idMapping: unmapped,
153 idMapping: unmapped,
|
| /dports/net-im/dendrite/dendrite-0.5.1/vendor/github.com/docker/docker/builder/dockerfile/ |
| H A D | internals_linux_test.go | 38 unmapped := &idtools.IdentityMapping{}
64 idMapping: unmapped,
72 idMapping: unmapped,
96 idMapping: unmapped,
137 idMapping: unmapped,
145 idMapping: unmapped,
153 idMapping: unmapped,
|