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/dports/biology/mapm3/mapm3-3.0_1/mapm/
H A Dauto_cmd.c315 PLACEME **unplaced=NULL; in place() local
328 parray(unplaced,n_loci,PLACEME); in place()
369 unplaced[i]->locus=chrom_locus[i]; in place()
375 unplaced[i]->locus, in place()
376 unplaced[i]->excluded); in place()
378 unplaced[i]->locus,unplaced[i]->excluded, in place()
392 &unplaced[i]->best_pos,unplaced[i]->best_map, in place()
430 unparray(unplaced,n_loci,PLACEME); in place()
489 PLACEME **unplaced=NULL; in place_together() local
506 parray(unplaced,n_loci,PLACEME); in place_together()
[all …]
H A Dorders.c747 PLACEME **unplaced;
816 PLACEME **unplaced;
839 unplaced[i]->locus,unplaced[i]->excluded);
884 unplaced[i]->locus,unplaced[i]->excluded,
887 unplaced[i]->excluded,placements,&unplaced[i]->best_pos,
925 PLACEME **unplaced; in randomize_markers_to_try()
944 PLACEME **unplaced; in rank_markers_to_try()
970 PLACEME **unplaced;
991 temp=unplaced[index];
992 unplaced[index]=unplaced[last];
[all …]
H A Dnpt_cmds.c540 PLACEME **unplaced; in order_maker() local
576 parray(unplaced,num_loci,PLACEME); in order_maker()
700 rag(loc2str(unplaced[i]->locus))); in order_maker()
719 unarray(unplaced[i]->excluded,bool); in order_maker()
720 free_map(unplaced[i]->best_map); in order_maker()
722 unparray(unplaced,num_loci,PLACEME); in order_maker()
733 PLACEME **unplaced; in greedy() local
755 parray(unplaced,num_loci,PLACEME); in greedy()
806 prev=unplaced[i]->locus; in greedy()
826 free_map(unplaced[i]->best_map); in greedy()
[all …]
/dports/science/cdk/cdk-cdk-2.3/tool/sdg/src/main/java/org/openscience/cdk/layout/
H A DHydrogenPlacer.java114 IAtomContainer unplaced = container.getBuilder().newInstance(IAtomContainer.class); in placeHydrogens2D() local
120 unplaced.addAtom(conAtom); in placeHydrogens2D()
132 for (int i = 0; i < unplaced.getAtomCount(); i++) { in placeHydrogens2D()
133 logger.debug("H-" + i, ": ", unplaced.getAtom(i).getPoint2d()); in placeHydrogens2D()
137 atomPlacer.distributePartners(atom, placed, centerPlacedAtoms, unplaced, bondLength); in placeHydrogens2D()
141 for (int i = 0; i < unplaced.getAtomCount(); i++) { in placeHydrogens2D()
142 logger.debug("H-" + i, ": ", unplaced.getAtom(i).getPoint2d()); in placeHydrogens2D()
/dports/www/gitlab-workhorse/gitlab-foss-0a901d60f8ae4a60c04ae82e6e9c3a03e9321417/spec/workers/
H A Dissue_placement_worker_spec.rb13 let_it_be_with_reload(:issue) { create(:issue, **unplaced, created_at: time) }
14 let_it_be_with_reload(:issue_a) { create(:issue, **unplaced, created_at: time - 1.minute) }
15 let_it_be_with_reload(:issue_b) { create(:issue, **unplaced, created_at: time - 2.minutes) }
16 let_it_be_with_reload(:issue_c) { create(:issue, **unplaced, created_at: time + 1.minute) }
17 let_it_be_with_reload(:issue_d) { create(:issue, **unplaced, created_at: time + 2.minutes) }
19 let_it_be_with_reload(:issue_f) { create(:issue, **unplaced, created_at: time + 1.minute) }
47 create_list(:issue, n - 5, **unplaced)
/dports/www/gitlab-workhorse/gitlab-foss-0a901d60f8ae4a60c04ae82e6e9c3a03e9321417/spec/workers/issues/
H A Dplacement_worker_spec.rb13 let_it_be_with_reload(:issue) { create(:issue, **unplaced, created_at: time) }
14 let_it_be_with_reload(:issue_a) { create(:issue, **unplaced, created_at: time - 1.minute) }
15 let_it_be_with_reload(:issue_b) { create(:issue, **unplaced, created_at: time - 2.minutes) }
16 let_it_be_with_reload(:issue_c) { create(:issue, **unplaced, created_at: time + 1.minute) }
17 let_it_be_with_reload(:issue_d) { create(:issue, **unplaced, created_at: time + 2.minutes) }
19 let_it_be_with_reload(:issue_f) { create(:issue, **unplaced, created_at: time + 1.minute) }
47 create_list(:issue, n - 5, **unplaced)
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/agp_validate/test/
H A Dun_test.out7 WARNING: in unplaced singleton scaffold, component orientation is not "+"
12 WARNING: in unplaced singleton scaffold, component orientation is not "+"
17 WARNING: in unplaced singleton scaffold, component is not used in full (600 out of 630 bp)
22 WARNING: in unplaced singleton scaffold, component is not used in full (600 out of 630 bp)
28 2 w50 in unplaced singleton scaffold, component is not used in full
29 2 w51 in unplaced singleton scaffold, component orientation is not "+"
H A Dsub_test.out8 2 e50 in unplaced singleton scaffold, component is not used in full
9 2 e51 in unplaced singleton scaffold, component orientation is not "+"
45 ERROR: in unplaced singleton scaffold, component orientation is not "+"
50 ERROR: in unplaced singleton scaffold, component orientation is not "+"
55 ERROR: in unplaced singleton scaffold, component is not used in full (600 out of 630 bp)
60 ERROR: in unplaced singleton scaffold, component is not used in full (600 out of 630 bp)
H A Dnew_test.out33 WARNING: in unplaced singleton scaffold, component is not used in full
36 WARNING: in unplaced singleton scaffold, component orientation is not "+"
39 WARNING: in unplaced singleton scaffold, component orientation is not "+"
48 1 w50 in unplaced singleton scaffold, component is not used in full
49 2 w51 in unplaced singleton scaffold, component orientation is not "+"
H A Dunplaced_singleton.out34 WARNING: in unplaced singleton scaffold, component is not used in full (850 out of 859 bp)
39 1 w50 in unplaced singleton scaffold, component is not used in full
/dports/devel/binutils/binutils-2.37/ld/testsuite/ld-elf/
H A Dorphan-6.l2 .*error: unplaced orphan section `\.notbad' from `tmpdir/.*\.o'
4 .*error: unplaced orphan section `\.note\.bar' from `tmpdir/.*\.o'
/dports/lang/gnatdroid-binutils-x86/binutils-2.27/ld/testsuite/ld-elf/
H A Dorphan-6.l2 .*error: unplaced orphan section `\.notbad' from `tmpdir/.*\.o'\.
4 .*error: unplaced orphan section `\.note\.bar' from `tmpdir/.*\.o'\.
/dports/devel/arm-elf-binutils/binutils-2.37/ld/testsuite/ld-elf/
H A Dorphan-6.l2 .*error: unplaced orphan section `\.notbad' from `tmpdir/.*\.o'
4 .*error: unplaced orphan section `\.note\.bar' from `tmpdir/.*\.o'
/dports/devel/gnulibiberty/binutils-2.37/ld/testsuite/ld-elf/
H A Dorphan-6.l2 .*error: unplaced orphan section `\.notbad' from `tmpdir/.*\.o'
4 .*error: unplaced orphan section `\.note\.bar' from `tmpdir/.*\.o'
/dports/lang/gnatdroid-binutils/binutils-2.27/ld/testsuite/ld-elf/
H A Dorphan-6.l2 .*error: unplaced orphan section `\.notbad' from `tmpdir/.*\.o'\.
4 .*error: unplaced orphan section `\.note\.bar' from `tmpdir/.*\.o'\.
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objects/genomecoll/
H A Dgenome_collection.asn169 unplaced (3), -- exist only on primary/diploid assembly-unit.
213 -- On primary assembly-unit: here will be the unplaced sequences
220 -- "unplaced-stats" holds stats for ChrUn which is omitted from "stats"
222 unplaced-stats SET OF GC-Scaf-stats OPTIONAL,
223 unplaced-unlocalized-stats SET OF GC-Scaf-stats OPTIONAL
443 unplaced-scaf SET OF GC-Scaf-stats OPTIONAL, -- unplaced at full assembly level
483 is-there-unplaced-scaf (72), -- 1 means there is unplaced scaffold. 0 means none
491 -- number of unplaced/unlocalized singleton scaffolds in minus orientation
522 … 4 - all chromosomes assembled; 5 - complete sequence genome; 6-unlocalized and unplaced scaffolds.
533 …top-level-count (113), -- Number of chromosomes or plasmids, unplaced/unlocalized scaffolds, alt-l…
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objects/genomecoll/
H A Dgenome_collection.asn169 unplaced (3), -- exist only on primary/diploid assembly-unit.
213 -- On primary assembly-unit: here will be the unplaced sequences
220 -- "unplaced-stats" holds stats for ChrUn which is omitted from "stats"
222 unplaced-stats SET OF GC-Scaf-stats OPTIONAL,
223 unplaced-unlocalized-stats SET OF GC-Scaf-stats OPTIONAL
443 unplaced-scaf SET OF GC-Scaf-stats OPTIONAL, -- unplaced at full assembly level
483 is-there-unplaced-scaf (72), -- 1 means there is unplaced scaffold. 0 means none
491 -- number of unplaced/unlocalized singleton scaffolds in minus orientation
522 … 4 - all chromosomes assembled; 5 - complete sequence genome; 6-unlocalized and unplaced scaffolds.
533 …top-level-count (113), -- Number of chromosomes or plasmids, unplaced/unlocalized scaffolds, alt-l…
/dports/games/hedgewars-server/hedgewars-src-1.0.0/hedgewars/
H A DuGears.pas760 var p,i,j,t,h,unplaced: Longword;
768 unplaced:= 0;
769 while (i < cLandMines) and (unplaced < 4) do
775 inc(unplaced)
777 unplaced:= 0;
783 unplaced:= 0;
784 while (i < cExplosives) and (unplaced < 4) do
790 inc(unplaced)
793 unplaced:= 0;
803 unplaced:= 0;
/dports/games/hedgewars/hedgewars-src-1.0.0/hedgewars/
H A DuGears.pas760 var p,i,j,t,h,unplaced: Longword;
768 unplaced:= 0;
769 while (i < cLandMines) and (unplaced < 4) do
775 inc(unplaced)
777 unplaced:= 0;
783 unplaced:= 0;
784 while (i < cExplosives) and (unplaced < 4) do
790 inc(unplaced)
793 unplaced:= 0;
803 unplaced:= 0;
/dports/games/gnubg/gnubg-1.06.002/
H A Dsimpleboard.c420 gint player, point, p, n, i, unplaced; in draw_checkers() local
425 unplaced = checkers_from_bgv(board->ms.bgv); in draw_checkers()
429 unplaced -= n; in draw_checkers()
433 unplaced -= n; in draw_checkers()
435 draw_checkers_off(board->cr, player, unplaced, c); in draw_checkers()
/dports/graphics/qgis/qgis-3.22.3/python/core/auto_generated/labeling/
H A Dqgslabelposition.sip.in43 :param isUnplaced: set to ``True`` if label was unplaced (e.g. due to collisions with other labels)
54 …sition: \"%1\"%2>" ).arg( text, sipCpp->isUnplaced ? QStringLiteral( " (unplaced)" ) : QString() );
/dports/lang/ghc/ghc-8.10.7/compiler/nativeGen/
H A DBlockLayout.hs563 let unplaced = filter (\x -> not (setMember x placed)) blocks function
564 singletons = map (\x -> (x,chainSingleton x)) unplaced :: [(BlockId,BlockChain)]
781 unplaced =
790 ASSERT(null unplaced)
793 if null unplaced then blockList else blockList ++ unplaced
/dports/cad/horizon-eda/horizon-2.1.0/src/imp/
H A Dimp_symbol.cpp239 std::map<UUIDPath<2>, std::string> unplaced; in update_unplaced() local
242 unplaced.emplace(it.first, it.second.primary_name); in update_unplaced()
245 unplaced_box->update(unplaced); in update_unplaced()
/dports/biology/wise/wise2.4.1/src/dnaindex/
H A Dcomparapath.dy145 long int unplaced = 0;
178 … fprintf(logfp,"Seen %ld unplaced vs %ld positions\n",unplaced,current->position[0] - start_pos);
240 unplaced++;
246 …fprintf(logfp,"PLACED %s %ld unplaced positions vs %ld considered\n",cls->seq->name,unplaced,last_…
/dports/graphics/qgis-ltr/qgis-3.16.16/python/core/auto_generated/labeling/
H A Dqgslabelingenginesettings.sip.in174 Returns the color to use when rendering unplaced labels.
183 Sets the ``color`` to use when rendering unplaced labels.

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