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Searched refs:usePercents (Results 1 – 9 of 9) sorted by relevance

/dports/biology/ugene/ugene-40.1/src/corelibs/U2View/src/ov_msa/
H A DMsaEditorSimilarityColumn.cpp97 if (curSettings.usePercents != set->usePercents) { in setSettings()
99 matrix->setPercentSimilarity(set->usePercents); in setSettings()
102 curSettings.usePercents = set->usePercents; in setSettings()
118 return curSettings.usePercents ? "%" : tr("score"); in getHeaderText()
150 matrix->setPercentSimilarity(newSettings.usePercents); in sl_createMatrixTaskFinished()
H A DMsaEditorSimilarityColumn.h45 : usePercents(false), excludeGaps(false) { in SimilarityStatisticsSettings()
48 bool usePercents; variable
/dports/biology/ugene/ugene-40.1/src/corelibs/U2Algorithm/src/util_msa_distance/
H A DMSADistanceAlgorithm.h96 usePercents = _usePercents; in setPercentSimilarity()
99 return usePercents; in isPercentSimilarity()
104 bool usePercents; variable
116 int getSimilarity(int row1, int row2, bool usePercents);
H A DMSADistanceAlgorithm.cpp108 : usePercents(true), excludeGaps(false), alignmentLength(0) { in MSADistanceMatrix()
112 : usePercents(_usePercents), excludeGaps(_excludeGaps), alignmentLength(ma->getLength()) { in MSADistanceMatrix()
123 return getSimilarity(row1, row2, usePercents); in getSimilarity()
/dports/biology/ugene/ugene-40.1/src/plugins/dna_stat/src/
H A DDistanceMatrixMSAProfileDialog.cpp118 s.usePercents = percentsRB->isChecked(); in accept()
207 …resultText += "<tr><td><b>" + tr("Table content:") + "</b></td><td>" + (s.usePercents ? (algo->get… in onSubTaskFinished()
293 int val = algo->getSimilarity(i, j, s.usePercents); in onSubTaskFinished()
295 resultText += "," + QString::number(val) + (s.usePercents ? "%" : ""); in onSubTaskFinished()
312 int maxVal = s.usePercents ? 100 : s.ma->getLength(); in createDistanceTable()
343 int val = algo->getSimilarity(i, j, s.usePercents); in createDistanceTable()
360 …resultText += "<td" + colorStr + ">" + QString::number(val) + (s.usePercents ? "%" : "") + "</td>"; in createDistanceTable()
398 : usePercents(false), in DistanceMatrixMSAProfileTaskSettings()
H A DDNAStatMSAProfileDialog.h72 usePercents = false; in DNAStatMSAProfileTaskSettings()
81 bool usePercents; // report percents but not counts variable
H A DDNAStatMSAProfileDialog.cpp110 s.usePercents = percentsRB->isChecked(); in accept()
165 int maxVal = s.usePercents ? 100 : s.ma->getNumRows(); in run()
191 … (s.usePercents ? tr("symbol percents") : tr("symbol counts")) + "</td></tr>\n"; in run()
385 if (s.usePercents) { in computeStats()
H A DDistanceMatrixMSAProfileDialog.h78 bool usePercents; // report percents but not counts variable
/dports/biology/ugene/ugene-40.1/src/corelibs/U2View/src/ov_msa/statistics/
H A DSeqStatisticsWidget.cpp86 settings->usePercents = true; in copySettings()
125 ui.percentsButton->setChecked(settings->usePercents); in restoreSettings()
126 ui.countsButton->setChecked(!settings->usePercents); in restoreSettings()
156 settings->usePercents = ui.percentsButton->isChecked(); in sl_onUnitsChanged()