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Searched refs:userModStep (Results 1 – 18 of 18) sorted by relevance

/dports/biology/ugene/ugene-40.1/src/corelibs/U2View/src/ov_msa/
H A DMcaEditorSequenceArea.cpp306 U2UseCommonUserModStep userModStep(editor->getMaObject()->getEntityRef(), os); in sl_removeColumnsOfGaps() local
307 Q_UNUSED(userModStep); in sl_removeColumnsOfGaps()
352 U2UseCommonUserModStep userModStep(mcaObj->getEntityRef(), os); in trimRowEnd() local
353 Q_UNUSED(userModStep); in trimRowEnd()
426 U2UseCommonUserModStep userModStep(maObj->getEntityRef(), os); in insertChar() local
427 Q_UNUSED(userModStep); in insertChar()
H A DMSAEditorSequenceArea.cpp354 U2UseCommonUserModStep userModStep(msaObj->getEntityRef(), os); in sl_delCol() local
355 Q_UNUSED(userModStep); in sl_delCol()
402 U2UseCommonUserModStep userModStep(msa->getEntityRef(), os); in sl_removeAllGaps() local
403 Q_UNUSED(userModStep); in sl_removeAllGaps()
709 U2UseCommonUserModStep userModStep(maObj->getEntityRef(), os); in reverseComplementModification() local
710 Q_UNUSED(userModStep); in reverseComplementModification()
H A DMSAEditor.cpp783 U2UseCommonUserModStep userModStep(msaObject->getEntityRef(), os); in sl_convertBetweenDnaAndRnaAlphabets() local
799 U2UseCommonUserModStep userModStep(msaObject->getEntityRef(), os); in sl_convertRawToDnaAlphabet() local
815 U2UseCommonUserModStep userModStep(msaObject->getEntityRef(), os); in sl_convertRawToAminoAlphabet() local
H A DMaEditorNameList.cpp249 U2UseCommonUserModStep userModStep(maObj->getEntityRef(), os); in sl_removeSelectedRows() local
250 Q_UNUSED(userModStep); in sl_removeSelectedRows()
/dports/biology/ugene/ugene-40.1/src/corelibs/U2View/src/ov_msa/mca_reads/
H A DMcaAlternativeMutationsWidget.cpp72 U2UseCommonUserModStep userModStep(mcaObject->getEntityRef(), os); in sl_updateAlternativeMutations() local
73 Q_UNUSED(userModStep); in sl_updateAlternativeMutations()
/dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/kalign/src/
H A DPairwiseAlignmentHirschbergTask.cpp144 U2UseCommonUserModStep userModStep(settings->msaRef, os); in onSubTaskFinished() local
145 Q_UNUSED(userModStep); in onSubTaskFinished()
H A DKalignTask.cpp220 U2UseCommonUserModStep userModStep(obj->getEntityRef(), stateInfo); in report() local
/dports/biology/ugene/ugene-40.1/src/plugins/api_tests/src/core/format/sqlite_mod_dbi/
H A DModDbiSQLiteSpecificUnitTests.cpp2150 Q_UNUSED(userModStep); in IMPLEMENT_MOD_TEST()
2210 Q_UNUSED(userModStep); in IMPLEMENT_MOD_TEST()
2411 U2UseCommonUserModStep userModStep(sqliteDbi, msaId, os); in IMPLEMENT_MOD_TEST() local
2413 Q_UNUSED(userModStep); in IMPLEMENT_MOD_TEST()
2443 U2UseCommonUserModStep userModStep(sqliteDbi, msaId, os); in IMPLEMENT_MOD_TEST() local
2445 Q_UNUSED(userModStep); in IMPLEMENT_MOD_TEST()
2477 U2UseCommonUserModStep userModStep(sqliteDbi, msaId, os); in IMPLEMENT_MOD_TEST() local
2479 Q_UNUSED(userModStep); in IMPLEMENT_MOD_TEST()
2519 Q_UNUSED(userModStep); in IMPLEMENT_MOD_TEST()
2563 Q_UNUSED(userModStep); in IMPLEMENT_MOD_TEST()
[all …]
/dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/umuscle/src/
H A DMuscleTask.cpp429 U2UseCommonUserModStep userModStep(obj->getEntityRef(), os); in report() local
448 U2UseCommonUserModStep userModStep(obj->getEntityRef(), os); in report() local
466 U2UseCommonUserModStep userModStep(obj->getEntityRef(), os); in report() local
/dports/biology/ugene/ugene-40.1/src/corelibs/U2View/src/ov_msa/view_rendering/
H A DMaEditorSequenceArea.cpp334 U2UseCommonUserModStep userModStep(maObj->getEntityRef(), os); in deleteCurrentSelection() local
335 Q_UNUSED(userModStep); in deleteCurrentSelection()
1191 U2UseCommonUserModStep userModStep(maObj->getEntityRef(), os); in insertGapsBeforeSelection() local
1192 Q_UNUSED(userModStep); in insertGapsBeforeSelection()
1233 U2UseCommonUserModStep userModStep(maObj->getEntityRef(), os); in removeGapsPrecedingSelection() local
1234 Q_UNUSED(userModStep); in removeGapsPrecedingSelection()
1510 U2UseCommonUserModStep userModStep(maObj->getEntityRef(), os); in replaceChar() local
/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/clustalo/
H A DClustalOSupportTask.cpp225 U2UseCommonUserModStep userModStep(dstObject->getEntityRef(), os); in onSubTaskFinished() local
226 Q_UNUSED(userModStep); in onSubTaskFinished()
/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/mafft/
H A DMAFFTSupportTask.cpp237 U2UseCommonUserModStep userModStep(obj->getEntityRef(), os); in onSubTaskFinished() local
238 Q_UNUSED(userModStep); in onSubTaskFinished()
/dports/biology/ugene/ugene-40.1/src/corelibs/U2Algorithm/src/util_msaedit/
H A DMsaUtilTasks.cpp164 U2UseCommonUserModStep userModStep(maObj->getEntityRef(), stateInfo); in report() local
/dports/biology/ugene/ugene-40.1/src/corelibs/U2Lang/src/support/
H A DSimpleWorkflowTask.cpp200 U2UseCommonUserModStep userModStep(msaObjectPointer->getEntityRef(), os); in report() local
/dports/biology/ugene/ugene-40.1/src/corelibs/U2View/src/ov_msa/move_to_object/
H A DMoveToObjectMaController.cpp197 U2UseCommonUserModStep userModStep(maObject->getEntityRef(), stateInfo); in run() local
/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/tcoffee/
H A DTCoffeeSupportTask.cpp249 U2UseCommonUserModStep userModStep(obj->getEntityRef(), os); in onSubTaskFinished() local
/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/clustalw/
H A DClustalWSupportTask.cpp264 U2UseCommonUserModStep userModStep(alObj->getEntityRef(), os); in onSubTaskFinished() local
/dports/biology/ugene/ugene-40.1/src/corelibs/U2Algorithm/src/smith_waterman/
H A DSmithWatermanReportCallback.cpp401 U2UseCommonUserModStep userModStep(sourceMsaRef, os); in planFor_MSA_Alignment_InCurrentWindow() local