/dports/biology/ugene/ugene-40.1/src/corelibs/U2View/src/ov_msa/ |
H A D | McaEditorSequenceArea.cpp | 306 U2UseCommonUserModStep userModStep(editor->getMaObject()->getEntityRef(), os); in sl_removeColumnsOfGaps() local 307 Q_UNUSED(userModStep); in sl_removeColumnsOfGaps() 352 U2UseCommonUserModStep userModStep(mcaObj->getEntityRef(), os); in trimRowEnd() local 353 Q_UNUSED(userModStep); in trimRowEnd() 426 U2UseCommonUserModStep userModStep(maObj->getEntityRef(), os); in insertChar() local 427 Q_UNUSED(userModStep); in insertChar()
|
H A D | MSAEditorSequenceArea.cpp | 354 U2UseCommonUserModStep userModStep(msaObj->getEntityRef(), os); in sl_delCol() local 355 Q_UNUSED(userModStep); in sl_delCol() 402 U2UseCommonUserModStep userModStep(msa->getEntityRef(), os); in sl_removeAllGaps() local 403 Q_UNUSED(userModStep); in sl_removeAllGaps() 709 U2UseCommonUserModStep userModStep(maObj->getEntityRef(), os); in reverseComplementModification() local 710 Q_UNUSED(userModStep); in reverseComplementModification()
|
H A D | MSAEditor.cpp | 783 U2UseCommonUserModStep userModStep(msaObject->getEntityRef(), os); in sl_convertBetweenDnaAndRnaAlphabets() local 799 U2UseCommonUserModStep userModStep(msaObject->getEntityRef(), os); in sl_convertRawToDnaAlphabet() local 815 U2UseCommonUserModStep userModStep(msaObject->getEntityRef(), os); in sl_convertRawToAminoAlphabet() local
|
H A D | MaEditorNameList.cpp | 249 U2UseCommonUserModStep userModStep(maObj->getEntityRef(), os); in sl_removeSelectedRows() local 250 Q_UNUSED(userModStep); in sl_removeSelectedRows()
|
/dports/biology/ugene/ugene-40.1/src/corelibs/U2View/src/ov_msa/mca_reads/ |
H A D | McaAlternativeMutationsWidget.cpp | 72 U2UseCommonUserModStep userModStep(mcaObject->getEntityRef(), os); in sl_updateAlternativeMutations() local 73 Q_UNUSED(userModStep); in sl_updateAlternativeMutations()
|
/dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/kalign/src/ |
H A D | PairwiseAlignmentHirschbergTask.cpp | 144 U2UseCommonUserModStep userModStep(settings->msaRef, os); in onSubTaskFinished() local 145 Q_UNUSED(userModStep); in onSubTaskFinished()
|
H A D | KalignTask.cpp | 220 U2UseCommonUserModStep userModStep(obj->getEntityRef(), stateInfo); in report() local
|
/dports/biology/ugene/ugene-40.1/src/plugins/api_tests/src/core/format/sqlite_mod_dbi/ |
H A D | ModDbiSQLiteSpecificUnitTests.cpp | 2150 Q_UNUSED(userModStep); in IMPLEMENT_MOD_TEST() 2210 Q_UNUSED(userModStep); in IMPLEMENT_MOD_TEST() 2411 U2UseCommonUserModStep userModStep(sqliteDbi, msaId, os); in IMPLEMENT_MOD_TEST() local 2413 Q_UNUSED(userModStep); in IMPLEMENT_MOD_TEST() 2443 U2UseCommonUserModStep userModStep(sqliteDbi, msaId, os); in IMPLEMENT_MOD_TEST() local 2445 Q_UNUSED(userModStep); in IMPLEMENT_MOD_TEST() 2477 U2UseCommonUserModStep userModStep(sqliteDbi, msaId, os); in IMPLEMENT_MOD_TEST() local 2479 Q_UNUSED(userModStep); in IMPLEMENT_MOD_TEST() 2519 Q_UNUSED(userModStep); in IMPLEMENT_MOD_TEST() 2563 Q_UNUSED(userModStep); in IMPLEMENT_MOD_TEST() [all …]
|
/dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/umuscle/src/ |
H A D | MuscleTask.cpp | 429 U2UseCommonUserModStep userModStep(obj->getEntityRef(), os); in report() local 448 U2UseCommonUserModStep userModStep(obj->getEntityRef(), os); in report() local 466 U2UseCommonUserModStep userModStep(obj->getEntityRef(), os); in report() local
|
/dports/biology/ugene/ugene-40.1/src/corelibs/U2View/src/ov_msa/view_rendering/ |
H A D | MaEditorSequenceArea.cpp | 334 U2UseCommonUserModStep userModStep(maObj->getEntityRef(), os); in deleteCurrentSelection() local 335 Q_UNUSED(userModStep); in deleteCurrentSelection() 1191 U2UseCommonUserModStep userModStep(maObj->getEntityRef(), os); in insertGapsBeforeSelection() local 1192 Q_UNUSED(userModStep); in insertGapsBeforeSelection() 1233 U2UseCommonUserModStep userModStep(maObj->getEntityRef(), os); in removeGapsPrecedingSelection() local 1234 Q_UNUSED(userModStep); in removeGapsPrecedingSelection() 1510 U2UseCommonUserModStep userModStep(maObj->getEntityRef(), os); in replaceChar() local
|
/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/clustalo/ |
H A D | ClustalOSupportTask.cpp | 225 U2UseCommonUserModStep userModStep(dstObject->getEntityRef(), os); in onSubTaskFinished() local 226 Q_UNUSED(userModStep); in onSubTaskFinished()
|
/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/mafft/ |
H A D | MAFFTSupportTask.cpp | 237 U2UseCommonUserModStep userModStep(obj->getEntityRef(), os); in onSubTaskFinished() local 238 Q_UNUSED(userModStep); in onSubTaskFinished()
|
/dports/biology/ugene/ugene-40.1/src/corelibs/U2Algorithm/src/util_msaedit/ |
H A D | MsaUtilTasks.cpp | 164 U2UseCommonUserModStep userModStep(maObj->getEntityRef(), stateInfo); in report() local
|
/dports/biology/ugene/ugene-40.1/src/corelibs/U2Lang/src/support/ |
H A D | SimpleWorkflowTask.cpp | 200 U2UseCommonUserModStep userModStep(msaObjectPointer->getEntityRef(), os); in report() local
|
/dports/biology/ugene/ugene-40.1/src/corelibs/U2View/src/ov_msa/move_to_object/ |
H A D | MoveToObjectMaController.cpp | 197 U2UseCommonUserModStep userModStep(maObject->getEntityRef(), stateInfo); in run() local
|
/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/tcoffee/ |
H A D | TCoffeeSupportTask.cpp | 249 U2UseCommonUserModStep userModStep(obj->getEntityRef(), os); in onSubTaskFinished() local
|
/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/clustalw/ |
H A D | ClustalWSupportTask.cpp | 264 U2UseCommonUserModStep userModStep(alObj->getEntityRef(), os); in onSubTaskFinished() local
|
/dports/biology/ugene/ugene-40.1/src/corelibs/U2Algorithm/src/smith_waterman/ |
H A D | SmithWatermanReportCallback.cpp | 401 U2UseCommonUserModStep userModStep(sourceMsaRef, os); in planFor_MSA_Alignment_InCurrentWindow() local
|