Searched refs:v4Ref (Results 1 – 2 of 2) sorted by relevance
| /dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/graphs/ |
| H A D | GraphBasedKBestHaplotypeFinderUnitTest.java | 283 SeqVertex v4Ref = new SeqVertex(Strings.repeat("C", refBubbleLength)); in testTripleBubbleData() local
292 …final String ref = preRef + v2Ref.getSequenceString() + midRef1 + v4Ref.getSequenceString() + midR… in testTripleBubbleData()
299 graph.addVertex(v4Ref); in testTripleBubbleData()
311 graph.addEdge(v3, v4Ref, new BaseEdge(true, 10)); in testTripleBubbleData()
312 graph.addEdge(v4Ref, v5, new BaseEdge(true, 10)); in testTripleBubbleData()
327 path = new Path<>(path, graph.getEdge(v3, v4Ref)); in testTripleBubbleData()
328 path = new Path<>(path, graph.getEdge(v4Ref, v5)); in testTripleBubbleData()
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| H A D | JunctionTreeKBestHaplotypeFinderUnitTest.java | 880 SeqVertex v4Ref = new SeqVertex(Strings.repeat("C", refBubbleLength)); in testTripleBubbleData() local
889 …final String ref = preRef + v2Ref.getSequenceString() + midRef1 + v4Ref.getSequenceString() + midR… in testTripleBubbleData()
896 graph.addVertex(v4Ref); in testTripleBubbleData()
908 graph.addEdge(v3, v4Ref, new BaseEdge(true, 10)); in testTripleBubbleData()
909 graph.addEdge(v4Ref, v5, new BaseEdge(true, 10)); in testTripleBubbleData()
924 path = new Path<>(path, graph.getEdge(v3, v4Ref)); in testTripleBubbleData()
925 path = new Path<>(path, graph.getEdge(v4Ref, v5)); in testTripleBubbleData()
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