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/dports/biology/star/STAR-2.7.9a/source/
H A DSoloFeature_countSmartSeq.cpp34 vector<vector<typeFeatureCount>> vCellFeatureCount(nCB); in countSmartSeq() local
87 vCellFeatureCount[icb].reserve(8192); in countSmartSeq()
88 vCellFeatureCount[icb].push_back({cbFeatUMI[icb]->feature, {1,1}});//first read in countSmartSeq()
91vCellFeatureCount[icb].push_back({fu->feature, {1,1}});//create next feature entry in countSmartSeq()
93 vCellFeatureCount[icb].back().count[0]++; //non-collapsed UMI count in countSmartSeq()
96 vCellFeatureCount[icb].back().count[1]++;//collapsed UMI count in countSmartSeq()
113 for (auto &cbf : vCellFeatureCount) { in countSmartSeq()
122 nGenePerCB[icb]=vCellFeatureCount[icb].size(); in countSmartSeq()
127 countCellGeneUMI[ic + 0] = vCellFeatureCount[icb][ig].feature; in countSmartSeq()
130 … countCellGeneUMI[ic + pSolo.umiDedup.countInd.NoDedup] = vCellFeatureCount[icb][ig].count[0]; in countSmartSeq()
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