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/dports/biology/fasttree/FastTree-2.1.10_5/
H A DFastTree-2.1.10.c717 numeric_t *varDiameter; /* To correct variances for distance "up" */ member
2637 NJ->varDiameter = (numeric_t *)mymalloc(sizeof(numeric_t)*NJ->maxnodes); in InitNJ()
2638 for (iNode = 0; iNode < NJ->maxnodes; iNode++) NJ->varDiameter[iNode] = 0; in InitNJ()
2689 NJ->varDiameter = myfree(NJ->varDiameter, sizeof(numeric_t)*NJ->maxnodes); in FreeNJ()
2840 double varIJ = rawIJ - NJ->varDiameter[join.i] - NJ->varDiameter[join.j]; in FastNJ()
2879 double deltaVarDiam = (nActive-2)*(NJ->varDiameter[join.i] - NJ->varDiameter[join.j]); in FastNJ()
2917 NJ->varDiameter[newnode] = bionjWeight * NJ->varDiameter[join.i] in FastNJ()
2918 + (1-bionjWeight) * NJ->varDiameter[join.j] in FastNJ()