Searched refs:variant_idx_end (Results 1 – 6 of 6) sorted by relevance
/dports/biology/plink/plink-ng-79b2df8c/2.0/Python/ |
H A D | pgenlib.pyx | 450 if variant_idx_end > self._info_ptr[0].raw_variant_ct: 473 if variant_idx_start >= variant_idx_end: 474 …rror("read_range() variant_idx_start >= variant_idx_end (" + str(variant_idx_start) + ", " + str(v… 518 if variant_idx_end > self._info_ptr[0].raw_variant_ct: 541 if variant_idx_start >= variant_idx_end: 542 …rror("read_range() variant_idx_start >= variant_idx_end (" + str(variant_idx_start) + ", " + str(v… 586 if variant_idx_end > self._info_ptr[0].raw_variant_ct: 609 if variant_idx_start >= variant_idx_end: 610 …rror("read_range() variant_idx_start >= variant_idx_end (" + str(variant_idx_start) + ", " + str(v… 899 if variant_idx_end > self._info_ptr[0].raw_variant_ct: [all …]
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/dports/biology/plink/plink-ng-79b2df8c/2.0/ |
H A D | plink2_cmdline.cc | 2139 const uint32_t variant_idx_end = cur_variant_idx + cur_variant_ct; in ComputePartitionAligned() local 2142 const uint32_t trailing_idx_ct = (-variant_idx_end) % alignment; in ComputePartitionAligned() 2182 uint32_t last_vidx_ct = variant_idx_end - vidx_starts[thread_ct - 1]; in ComputePartitionAligned() 2188 vidx_starts[tidx] = variant_idx_end; in ComputePartitionAligned() 2191 vidx_starts[orig_thread_ct] = variant_idx_end; in ComputePartitionAligned()
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H A D | plink2_data.cc | 7498 …t32_t* old_variant_uidx_to_new, uint32_t variant_idx_start, uint32_t variant_idx_end, TextStream* … in PvarInfoReloadInterval() argument 7512 const uint32_t cur_batch_size = variant_idx_end - variant_idx_start; in PvarInfoReloadInterval() 7548 …nt32_t* new_variant_idx_to_old, uint32_t variant_idx_start, uint32_t variant_idx_end, uint32_t inf… 7559 for (uint32_t variant_idx = variant_idx_start; variant_idx != variant_idx_end; ++variant_idx) { 7831 uint32_t variant_idx_end = MINV(variant_idx_start + batch_size, variant_ct); variable 7833 …reterr = PvarInfoReloadInterval(old_variant_uidx_to_new, variant_idx_start, variant_idx_end, &pvar… 7838 …onref_flags, variant_cms, new_variant_idx_to_old, variant_idx_start, variant_idx_end, info_pr_flag… 7842 variant_idx_start = variant_idx_end;
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H A D | plink2_ld.cc | 1220 const uint32_t variant_idx_end = variant_idx + chr_variant_ct; in LdPruneSubcontigSplitAll() local 1266 } while (++variant_idx < variant_idx_end); in LdPruneSubcontigSplitAll() 1276 variant_idx = variant_idx_end; in LdPruneSubcontigSplitAll()
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H A D | plink2_misc.cc | 4744 const uint32_t variant_idx_end = (hwe_x_ct * (S_CAST(uint64_t, tidx) + 1)) / thread_ct; in ComputeHweXPvalsMain() local 4753 uint32_t next_print_variant_idx = variant_idx_end; in ComputeHweXPvalsMain() 4755 next_print_variant_idx = variant_idx_end / 100; in ComputeHweXPvalsMain() 4760 for (; variant_idx != variant_idx_end; ++variant_idx) { in ComputeHweXPvalsMain() 4808 pct = (variant_idx * 100LLU) / variant_idx_end; in ComputeHweXPvalsMain() 4811 next_print_variant_idx = (pct * S_CAST(uint64_t, variant_idx_end)) / 100; in ComputeHweXPvalsMain()
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H A D | plink2_export.cc | 556 uint32_t variant_idx_end; in TransposeToPlink1SmajWriteThread() local 558 variant_idx_end = variant_batch_idx_full_end * kPglNypTransposeBatch; in TransposeToPlink1SmajWriteThread() 560 variant_idx_end = variant_ct; in TransposeToPlink1SmajWriteThread() 565 …const uint32_t thread_variant_ct = variant_idx_end - variant_batch_idx_start * kPglNypTransposeBat… in TransposeToPlink1SmajWriteThread() 579 if (variant_batch_idx * kPglNypTransposeBatch >= variant_idx_end) { in TransposeToPlink1SmajWriteThread() 582 variant_batch_size = variant_idx_end - variant_batch_idx * kPglNypTransposeBatch; in TransposeToPlink1SmajWriteThread()
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