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Searched refs:variant_idx_end (Results 1 – 6 of 6) sorted by relevance

/dports/biology/plink/plink-ng-79b2df8c/2.0/Python/
H A Dpgenlib.pyx450 if variant_idx_end > self._info_ptr[0].raw_variant_ct:
473 if variant_idx_start >= variant_idx_end:
474 …rror("read_range() variant_idx_start >= variant_idx_end (" + str(variant_idx_start) + ", " + str(v…
518 if variant_idx_end > self._info_ptr[0].raw_variant_ct:
541 if variant_idx_start >= variant_idx_end:
542 …rror("read_range() variant_idx_start >= variant_idx_end (" + str(variant_idx_start) + ", " + str(v…
586 if variant_idx_end > self._info_ptr[0].raw_variant_ct:
609 if variant_idx_start >= variant_idx_end:
610 …rror("read_range() variant_idx_start >= variant_idx_end (" + str(variant_idx_start) + ", " + str(v…
899 if variant_idx_end > self._info_ptr[0].raw_variant_ct:
[all …]
/dports/biology/plink/plink-ng-79b2df8c/2.0/
H A Dplink2_cmdline.cc2139 const uint32_t variant_idx_end = cur_variant_idx + cur_variant_ct; in ComputePartitionAligned() local
2142 const uint32_t trailing_idx_ct = (-variant_idx_end) % alignment; in ComputePartitionAligned()
2182 uint32_t last_vidx_ct = variant_idx_end - vidx_starts[thread_ct - 1]; in ComputePartitionAligned()
2188 vidx_starts[tidx] = variant_idx_end; in ComputePartitionAligned()
2191 vidx_starts[orig_thread_ct] = variant_idx_end; in ComputePartitionAligned()
H A Dplink2_data.cc7498 …t32_t* old_variant_uidx_to_new, uint32_t variant_idx_start, uint32_t variant_idx_end, TextStream* … in PvarInfoReloadInterval() argument
7512 const uint32_t cur_batch_size = variant_idx_end - variant_idx_start; in PvarInfoReloadInterval()
7548 …nt32_t* new_variant_idx_to_old, uint32_t variant_idx_start, uint32_t variant_idx_end, uint32_t inf…
7559 for (uint32_t variant_idx = variant_idx_start; variant_idx != variant_idx_end; ++variant_idx) {
7831 uint32_t variant_idx_end = MINV(variant_idx_start + batch_size, variant_ct); variable
7833 …reterr = PvarInfoReloadInterval(old_variant_uidx_to_new, variant_idx_start, variant_idx_end, &pvar…
7838 …onref_flags, variant_cms, new_variant_idx_to_old, variant_idx_start, variant_idx_end, info_pr_flag…
7842 variant_idx_start = variant_idx_end;
H A Dplink2_ld.cc1220 const uint32_t variant_idx_end = variant_idx + chr_variant_ct; in LdPruneSubcontigSplitAll() local
1266 } while (++variant_idx < variant_idx_end); in LdPruneSubcontigSplitAll()
1276 variant_idx = variant_idx_end; in LdPruneSubcontigSplitAll()
H A Dplink2_misc.cc4744 const uint32_t variant_idx_end = (hwe_x_ct * (S_CAST(uint64_t, tidx) + 1)) / thread_ct; in ComputeHweXPvalsMain() local
4753 uint32_t next_print_variant_idx = variant_idx_end; in ComputeHweXPvalsMain()
4755 next_print_variant_idx = variant_idx_end / 100; in ComputeHweXPvalsMain()
4760 for (; variant_idx != variant_idx_end; ++variant_idx) { in ComputeHweXPvalsMain()
4808 pct = (variant_idx * 100LLU) / variant_idx_end; in ComputeHweXPvalsMain()
4811 next_print_variant_idx = (pct * S_CAST(uint64_t, variant_idx_end)) / 100; in ComputeHweXPvalsMain()
H A Dplink2_export.cc556 uint32_t variant_idx_end; in TransposeToPlink1SmajWriteThread() local
558 variant_idx_end = variant_batch_idx_full_end * kPglNypTransposeBatch; in TransposeToPlink1SmajWriteThread()
560 variant_idx_end = variant_ct; in TransposeToPlink1SmajWriteThread()
565 …const uint32_t thread_variant_ct = variant_idx_end - variant_batch_idx_start * kPglNypTransposeBat… in TransposeToPlink1SmajWriteThread()
579 if (variant_batch_idx * kPglNypTransposeBatch >= variant_idx_end) { in TransposeToPlink1SmajWriteThread()
582 variant_batch_size = variant_idx_end - variant_batch_idx * kPglNypTransposeBatch; in TransposeToPlink1SmajWriteThread()