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Searched refs:vcf_ref_end (Results 1 – 4 of 4) sorted by relevance

/dports/biology/bio-mocha/bcftools-1.14/
H A Dcsq.c1868 int32_t vcf_ref_end = splice->vcf.pos + ref_len - 1; // end pos of the VCF REF allele in shifted_del_synonymous() local
1870 if ( vcf_ref_end + ndel > tr_ref_end ) in shifted_del_synonymous()
1881 …char *ptr_ref = splice->tr->ref + N_REF_PAD + (vcf_ref_end + 1 - splice->tr->beg); // the first r… in shifted_del_synonymous()
/dports/biology/bcftools/bcftools-1.14/
H A Dcsq.c1868 int32_t vcf_ref_end = splice->vcf.pos + ref_len - 1; // end pos of the VCF REF allele in shifted_del_synonymous() local
1870 if ( vcf_ref_end + ndel > tr_ref_end ) in shifted_del_synonymous()
1881 …char *ptr_ref = splice->tr->ref + N_REF_PAD + (vcf_ref_end + 1 - splice->tr->beg); // the first r… in shifted_del_synonymous()
/dports/biology/py-pysam/pysam-0.18.0/bcftools/
H A Dcsq.c1868 int32_t vcf_ref_end = splice->vcf.pos + ref_len - 1; // end pos of the VCF REF allele in shifted_del_synonymous() local
1870 if ( vcf_ref_end + ndel > tr_ref_end ) in shifted_del_synonymous()
1881 …char *ptr_ref = splice->tr->ref + N_REF_PAD + (vcf_ref_end + 1 - splice->tr->beg); // the first r… in shifted_del_synonymous()
H A Dcsq.c.pysam.c1870 int32_t vcf_ref_end = splice->vcf.pos + ref_len - 1; // end pos of the VCF REF allele in shifted_del_synonymous() local
1872 if ( vcf_ref_end + ndel > tr_ref_end ) in shifted_del_synonymous()
1883 …char *ptr_ref = splice->tr->ref + N_REF_PAD + (vcf_ref_end + 1 - splice->tr->beg); // the first r… in shifted_del_synonymous()