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Searched refs:verticalNextGridOrigin (Results 1 – 3 of 3) sorted by relevance

/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/seeds/
H A Dbanded_chain_alignment_impl.h770 if (horizontalNextGridOrigin != 0u || verticalNextGridOrigin != 0u) in _initializeBandedChain()
783 1 - lowerDiagonal(band) - verticalNextGridOrigin); in _initializeBandedChain()
831 length(infixV) - verticalNextGridOrigin + 1); in _initializeBandedChain()
918 gridEnd.i2 - gridBegin.i2 + 1 - verticalNextGridOrigin); in _computeGapArea()
981 TPosition relativeVerticalNextGridOrigin = verticalNextGridOrigin; in _computeAnchorArea()
988 length(infixV) - verticalNextGridOrigin + 1); in _computeAnchorArea()
1058 length(infixV) - verticalNextGridOrigin + 1); in _finishBandedChain()
1073 gridBegin.i2 += verticalNextGridOrigin; in _finishBandedChain()
1109 verticalNextGridOrigin = _max(0, in _finishBandedChain()
1121 length(infixV) - verticalNextGridOrigin + 1); in _finishBandedChain()
[all …]
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/seeds/
H A Dbanded_chain_alignment_impl.h858 if (horizontalNextGridOrigin != 0u || verticalNextGridOrigin != 0u) in _initializeBandedChain()
870 1 - lowerDiagonal(band) - verticalNextGridOrigin); in _initializeBandedChain()
920 length(infixV) - verticalNextGridOrigin + 1); in _initializeBandedChain()
1010 gridEnd.i2 - gridBegin.i2 + 1 - verticalNextGridOrigin); in _computeGapArea()
1074 TPosition relativeVerticalNextGridOrigin = verticalNextGridOrigin; in _computeAnchorArea()
1081 length(infixV) - verticalNextGridOrigin + 1); in _computeAnchorArea()
1152 length(infixV) - verticalNextGridOrigin + 1); in _finishBandedChain()
1167 gridBegin.i2 += verticalNextGridOrigin; in _finishBandedChain()
1203 verticalNextGridOrigin = _max(0, in _finishBandedChain()
1215 length(infixV) - verticalNextGridOrigin + 1); in _finishBandedChain()
[all …]
/dports/biology/seqan/seqan-library-2.4.0/include/seqan/seeds/
H A Dbanded_chain_alignment_impl.h858 if (horizontalNextGridOrigin != 0u || verticalNextGridOrigin != 0u) in _initializeBandedChain()
870 1 - lowerDiagonal(band) - verticalNextGridOrigin); in _initializeBandedChain()
920 length(infixV) - verticalNextGridOrigin + 1); in _initializeBandedChain()
1010 gridEnd.i2 - gridBegin.i2 + 1 - verticalNextGridOrigin); in _computeGapArea()
1074 TPosition relativeVerticalNextGridOrigin = verticalNextGridOrigin; in _computeAnchorArea()
1081 length(infixV) - verticalNextGridOrigin + 1); in _computeAnchorArea()
1152 length(infixV) - verticalNextGridOrigin + 1); in _finishBandedChain()
1167 gridBegin.i2 += verticalNextGridOrigin; in _finishBandedChain()
1203 verticalNextGridOrigin = _max(0, in _finishBandedChain()
1215 length(infixV) - verticalNextGridOrigin + 1); in _finishBandedChain()
[all …]