Searched refs:vit_prob (Results 1 – 4 of 4) sorted by relevance
/dports/biology/bcftools/bcftools-1.14/ |
H A D | HMM.c | 97 if ( !hmm->init.vit_prob ) in hmm_init_states() 104 if ( !hmm->state.vit_prob ) in hmm_init_states() 124 …memcpy(hmm->state.vit_prob,hmm->init.vit_prob,sizeof(double)*hmm->nstates); // can be changed by s… in hmm_init_states() 157 snapshot->vit_prob = (double*) (mem + str_size + pad_size); in hmm_snapshot() 158 snapshot->fwd_prob = snapshot->vit_prob + hmm->nstates; in hmm_snapshot() 170 memcpy(hmm->state.vit_prob,hmm->init.vit_prob,sizeof(double)*hmm->nstates); in hmm_restore() 176 memcpy(hmm->state.vit_prob,snapshot->vit_prob,sizeof(double)*hmm->nstates); in hmm_restore() 185 memcpy(hmm->state.vit_prob,hmm->init.vit_prob,sizeof(double)*hmm->nstates); in hmm_reset() 243 memcpy(hmm->vprob, hmm->state.vit_prob, sizeof(*hmm->state.vit_prob)*nstates); in hmm_run_viterbi() 492 free(hmm->init.vit_prob); in hmm_destroy() [all …]
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/dports/biology/bio-mocha/bcftools-1.14/ |
H A D | HMM.c | 97 if ( !hmm->init.vit_prob ) in hmm_init_states() 104 if ( !hmm->state.vit_prob ) in hmm_init_states() 124 …memcpy(hmm->state.vit_prob,hmm->init.vit_prob,sizeof(double)*hmm->nstates); // can be changed by s… in hmm_init_states() 157 snapshot->vit_prob = (double*) (mem + str_size + pad_size); in hmm_snapshot() 158 snapshot->fwd_prob = snapshot->vit_prob + hmm->nstates; in hmm_snapshot() 170 memcpy(hmm->state.vit_prob,hmm->init.vit_prob,sizeof(double)*hmm->nstates); in hmm_restore() 176 memcpy(hmm->state.vit_prob,snapshot->vit_prob,sizeof(double)*hmm->nstates); in hmm_restore() 185 memcpy(hmm->state.vit_prob,hmm->init.vit_prob,sizeof(double)*hmm->nstates); in hmm_reset() 243 memcpy(hmm->vprob, hmm->state.vit_prob, sizeof(*hmm->state.vit_prob)*nstates); in hmm_run_viterbi() 492 free(hmm->init.vit_prob); in hmm_destroy() [all …]
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/dports/biology/py-pysam/pysam-0.18.0/bcftools/ |
H A D | HMM.c | 97 if ( !hmm->init.vit_prob ) in hmm_init_states() 104 if ( !hmm->state.vit_prob ) in hmm_init_states() 124 …memcpy(hmm->state.vit_prob,hmm->init.vit_prob,sizeof(double)*hmm->nstates); // can be changed by s… in hmm_init_states() 157 snapshot->vit_prob = (double*) (mem + str_size + pad_size); in hmm_snapshot() 158 snapshot->fwd_prob = snapshot->vit_prob + hmm->nstates; in hmm_snapshot() 170 memcpy(hmm->state.vit_prob,hmm->init.vit_prob,sizeof(double)*hmm->nstates); in hmm_restore() 176 memcpy(hmm->state.vit_prob,snapshot->vit_prob,sizeof(double)*hmm->nstates); in hmm_restore() 185 memcpy(hmm->state.vit_prob,hmm->init.vit_prob,sizeof(double)*hmm->nstates); in hmm_reset() 243 memcpy(hmm->vprob, hmm->state.vit_prob, sizeof(*hmm->state.vit_prob)*nstates); in hmm_run_viterbi() 492 free(hmm->init.vit_prob); in hmm_destroy() [all …]
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H A D | HMM.c.pysam.c | 99 if ( !hmm->init.vit_prob ) in hmm_init_states() 106 if ( !hmm->state.vit_prob ) in hmm_init_states() 126 …memcpy(hmm->state.vit_prob,hmm->init.vit_prob,sizeof(double)*hmm->nstates); // can be changed by s… in hmm_init_states() 159 snapshot->vit_prob = (double*) (mem + str_size + pad_size); in hmm_snapshot() 160 snapshot->fwd_prob = snapshot->vit_prob + hmm->nstates; in hmm_snapshot() 172 memcpy(hmm->state.vit_prob,hmm->init.vit_prob,sizeof(double)*hmm->nstates); in hmm_restore() 178 memcpy(hmm->state.vit_prob,snapshot->vit_prob,sizeof(double)*hmm->nstates); in hmm_restore() 187 memcpy(hmm->state.vit_prob,hmm->init.vit_prob,sizeof(double)*hmm->nstates); in hmm_reset() 245 memcpy(hmm->vprob, hmm->state.vit_prob, sizeof(*hmm->state.vit_prob)*nstates); in hmm_run_viterbi() 494 free(hmm->init.vit_prob); in hmm_destroy() [all …]
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