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Searched refs:vit_prob (Results 1 – 4 of 4) sorted by relevance

/dports/biology/bcftools/bcftools-1.14/
H A DHMM.c97 if ( !hmm->init.vit_prob ) in hmm_init_states()
104 if ( !hmm->state.vit_prob ) in hmm_init_states()
124 …memcpy(hmm->state.vit_prob,hmm->init.vit_prob,sizeof(double)*hmm->nstates); // can be changed by s… in hmm_init_states()
157 snapshot->vit_prob = (double*) (mem + str_size + pad_size); in hmm_snapshot()
158 snapshot->fwd_prob = snapshot->vit_prob + hmm->nstates; in hmm_snapshot()
170 memcpy(hmm->state.vit_prob,hmm->init.vit_prob,sizeof(double)*hmm->nstates); in hmm_restore()
176 memcpy(hmm->state.vit_prob,snapshot->vit_prob,sizeof(double)*hmm->nstates); in hmm_restore()
185 memcpy(hmm->state.vit_prob,hmm->init.vit_prob,sizeof(double)*hmm->nstates); in hmm_reset()
243 memcpy(hmm->vprob, hmm->state.vit_prob, sizeof(*hmm->state.vit_prob)*nstates); in hmm_run_viterbi()
492 free(hmm->init.vit_prob); in hmm_destroy()
[all …]
/dports/biology/bio-mocha/bcftools-1.14/
H A DHMM.c97 if ( !hmm->init.vit_prob ) in hmm_init_states()
104 if ( !hmm->state.vit_prob ) in hmm_init_states()
124 …memcpy(hmm->state.vit_prob,hmm->init.vit_prob,sizeof(double)*hmm->nstates); // can be changed by s… in hmm_init_states()
157 snapshot->vit_prob = (double*) (mem + str_size + pad_size); in hmm_snapshot()
158 snapshot->fwd_prob = snapshot->vit_prob + hmm->nstates; in hmm_snapshot()
170 memcpy(hmm->state.vit_prob,hmm->init.vit_prob,sizeof(double)*hmm->nstates); in hmm_restore()
176 memcpy(hmm->state.vit_prob,snapshot->vit_prob,sizeof(double)*hmm->nstates); in hmm_restore()
185 memcpy(hmm->state.vit_prob,hmm->init.vit_prob,sizeof(double)*hmm->nstates); in hmm_reset()
243 memcpy(hmm->vprob, hmm->state.vit_prob, sizeof(*hmm->state.vit_prob)*nstates); in hmm_run_viterbi()
492 free(hmm->init.vit_prob); in hmm_destroy()
[all …]
/dports/biology/py-pysam/pysam-0.18.0/bcftools/
H A DHMM.c97 if ( !hmm->init.vit_prob ) in hmm_init_states()
104 if ( !hmm->state.vit_prob ) in hmm_init_states()
124 …memcpy(hmm->state.vit_prob,hmm->init.vit_prob,sizeof(double)*hmm->nstates); // can be changed by s… in hmm_init_states()
157 snapshot->vit_prob = (double*) (mem + str_size + pad_size); in hmm_snapshot()
158 snapshot->fwd_prob = snapshot->vit_prob + hmm->nstates; in hmm_snapshot()
170 memcpy(hmm->state.vit_prob,hmm->init.vit_prob,sizeof(double)*hmm->nstates); in hmm_restore()
176 memcpy(hmm->state.vit_prob,snapshot->vit_prob,sizeof(double)*hmm->nstates); in hmm_restore()
185 memcpy(hmm->state.vit_prob,hmm->init.vit_prob,sizeof(double)*hmm->nstates); in hmm_reset()
243 memcpy(hmm->vprob, hmm->state.vit_prob, sizeof(*hmm->state.vit_prob)*nstates); in hmm_run_viterbi()
492 free(hmm->init.vit_prob); in hmm_destroy()
[all …]
H A DHMM.c.pysam.c99 if ( !hmm->init.vit_prob ) in hmm_init_states()
106 if ( !hmm->state.vit_prob ) in hmm_init_states()
126 …memcpy(hmm->state.vit_prob,hmm->init.vit_prob,sizeof(double)*hmm->nstates); // can be changed by s… in hmm_init_states()
159 snapshot->vit_prob = (double*) (mem + str_size + pad_size); in hmm_snapshot()
160 snapshot->fwd_prob = snapshot->vit_prob + hmm->nstates; in hmm_snapshot()
172 memcpy(hmm->state.vit_prob,hmm->init.vit_prob,sizeof(double)*hmm->nstates); in hmm_restore()
178 memcpy(hmm->state.vit_prob,snapshot->vit_prob,sizeof(double)*hmm->nstates); in hmm_restore()
187 memcpy(hmm->state.vit_prob,hmm->init.vit_prob,sizeof(double)*hmm->nstates); in hmm_reset()
245 memcpy(hmm->vprob, hmm->state.vit_prob, sizeof(*hmm->state.vit_prob)*nstates); in hmm_run_viterbi()
494 free(hmm->init.vit_prob); in hmm_destroy()
[all …]