Searched refs:warpis (Results 1 – 5 of 5) sorted by relevance
| /dports/biology/mafft/mafft-7.267-without-extensions/core/ |
| H A D | Galign11.c | 32 int *warpis, int *warpjs, int warpbase ) in Atracking() argument
101 ifi = warpis[ijp[iin][jin]-warpbase]; in Atracking()
206 int *warpis = NULL; in G__align11() local
258 warpis = NULL; in G__align11()
566 if( warpn && prevwarpi[j-1] == warpis[warpn-1] && prevwarpj[j-1] == warpjs[warpn-1] ) in G__align11()
573 warpis = realloc( warpis, sizeof(int) * ( warpn+1 ) ); in G__align11()
575 warpis[warpn] = prevwarpi[j-1]; in G__align11()
662 …Atracking( currentw, lastverticalw, seq1, seq2, mseq1, mseq2, ijp, tailgp, warpis, warpjs, warpbas… in G__align11()
663 if( warpis ) free( warpis ); in G__align11()
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| H A D | Lalign11.c | 95 int *warpis, int *warpjs, int warpbase ) in Ltracking() argument
132 ifi = warpis[ijp[iin][jin]-warpbase]; in Ltracking()
251 int *warpis = NULL; in L__align11() local
304 warpis = NULL; in L__align11()
604 if( warpn && prevwarpi[j-1] == warpis[warpn-1] && prevwarpj[j-1] == warpjs[warpn-1] ) in L__align11()
611 warpis = realloc( warpis, sizeof(int) * ( warpn+1 ) ); in L__align11()
613 warpis[warpn] = prevwarpi[j-1]; in L__align11()
717 …erticalw, seq1, seq2, mseq1, mseq2, ijp, off1pt, off2pt, endali, endalj, warpis, warpjs, warpbase … in L__align11()
718 if( warpis ) free( warpis ); in L__align11()
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| H A D | partSalignmm.c | 742 ifi = warpis[ijp[iin][jin]-warpbase]; in Atracking_localhom()
1011 int *warpis = NULL; in partA__align() local
1109 warpis = NULL; in partA__align()
1530 warpis = realloc( warpis, sizeof(int) * ( warpn+1 ) ); in partA__align()
1532 warpis[warpn] = prevwarpi[j-1]; in partA__align()
1619 if( warpis ) free( warpis ); in partA__align()
1699 int *warpis = NULL; in partA__align_variousdist() local
1822 warpis = NULL; in partA__align_variousdist()
2266 warpis = realloc( warpis, sizeof(int) * ( warpn+1 ) ); in partA__align_variousdist()
2268 warpis[warpn] = prevwarpi[j-1]; in partA__align_variousdist()
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| H A D | Salignmm.c | 809 ifi = warpis[ijp[iin][jin]-warpbase]; in Atracking_localhom()
1070 int *warpis = NULL; in A__align() local
1171 warpis = NULL; in A__align()
1655 warpis = realloc( warpis, sizeof(int) * ( warpn+1 ) ); in A__align()
1657 warpis[warpn] = prevwarpi[j-1]; in A__align()
1745 if( warpis ) free( warpis ); in A__align()
1837 int *warpis = NULL; in A__align_variousdist() local
1966 warpis = NULL; in A__align_variousdist()
2504 warpis = realloc( warpis, sizeof(int) * ( warpn+1 ) ); in A__align_variousdist()
2506 warpis[warpn] = prevwarpi[j-1]; in A__align_variousdist()
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| H A D | Dalignmm.c | 701 ifi = warpis[ijp[iin][jin]-warpbase]; in Atracking_localhom()
2772 int *warpis = NULL; in D__align() local
2895 warpis = NULL; in D__align()
4132 warpis = realloc( warpis, sizeof(int) * ( warpn+1 ) ); in D__align()
4134 warpis[warpn] = prevwarpi[j-1]; in D__align()
4354 if( warpis ) free( warpis ); in D__align()
4608 int *warpis = NULL; in D__align_variousdist() local
4765 warpis = NULL; in D__align_variousdist()
6065 warpis = realloc( warpis, sizeof(int) * ( warpn+1 ) ); in D__align_variousdist()
6067 warpis[warpn] = prevwarpi[j-1]; in D__align_variousdist()
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