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Searched refs:warpj (Results 1 – 5 of 5) sorted by relevance

/dports/biology/mafft/mafft-7.267-without-extensions/core/
H A DGalign11.c209 int *warpj = NULL; in G__align11() local
272 warpj = AllocateIntVec( lgth2+1 ); in G__align11()
281 for( i=0; i<lgth2+1; i++ ) warpj[i] = -warpbase; in G__align11()
510 warpjpt = warpj + 1; in G__align11()
646 intncpy( prevwarpj, warpj, lastj ); in G__align11()
657 free( warpj ); in G__align11()
H A DLalign11.c254 int *warpj = NULL; in L__align11() local
311 warpj = AllocateIntVec( lgth2+1 ); in L__align11()
320 for( i=0; i<lgth2+1; i++ ) warpj[i] = -warpbase; in L__align11()
528 warpjpt = warpj + 1; in L__align11()
686 intncpy( prevwarpj, warpj, lastj ); in L__align11()
697 free( warpj ); in L__align11()
H A DpartSalignmm.c1014 int *warpj = NULL; in partA__align() local
1125 warpj = AllocateIntVec( lgth2+1 ); in partA__align()
1134 for( i=0; i<lgth2+1; i++ ) warpj[i] = -warpbase; in partA__align()
1463 warpjpt = warpj + 1; in partA__align()
1578 intncpy( prevwarpj, warpj, lastj ); in partA__align()
1588 free( warpj ); in partA__align()
1702 int *warpj = NULL; in partA__align_variousdist() local
1837 warpj = AllocateIntVec( lgth2+1 ); in partA__align_variousdist()
2197 warpjpt = warpj + 1; in partA__align_variousdist()
2315 intncpy( prevwarpj, warpj, lastj ); in partA__align_variousdist()
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H A DSalignmm.c1073 int *warpj = NULL; in A__align() local
1187 warpj = AllocateIntVec( lgth2+1 ); in A__align()
1196 for( i=0; i<lgth2+1; i++ ) warpj[i] = -warpbase; in A__align()
1581 warpjpt = warpj + 1; in A__align()
1703 intncpy( prevwarpj, warpj, lastj ); in A__align()
1714 free( warpj ); in A__align()
1840 int *warpj = NULL; in A__align_variousdist() local
1980 warpj = AllocateIntVec( lgth2+1 ); in A__align_variousdist()
2431 warpjpt = warpj + 1; in A__align_variousdist()
2552 intncpy( prevwarpj, warpj, lastj ); in A__align_variousdist()
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H A DDalignmm.c2775 int *warpj = NULL; in D__align() local
2913 warpj = AllocateIntVec( lgth2+1 ); in D__align()
2922 for( i=0; i<lgth2+1; i++ ) warpj[i] = -warpbase; in D__align()
3658 warpjpt = warpj + 1; in D__align()
4307 intncpy( prevwarpj, warpj, lastj ); in D__align()
4322 free( warpj ); in D__align()
4611 int *warpj = NULL; in D__align_variousdist() local
4783 warpj = AllocateIntVec( lgth2+1 ); in D__align_variousdist()
5588 warpjpt = warpj + 1; in D__align_variousdist()
6240 intncpy( prevwarpj, warpj, lastj ); in D__align_variousdist()
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