Home
last modified time | relevance | path

Searched refs:whichSitePats (Results 1 – 4 of 4) sorted by relevance

/dports/biology/mrbayes/MrBayes-3.2.7/src/
H A Dlikelihood.h118 int Likelihood_Adgamma (TreeNode *p, int division, int chain, MrBFlt *lnL, int whichSitePats);
119 int Likelihood_Gen (TreeNode *p, int division, int chain, MrBFlt *lnL, int whichSitePats);
121 int Likelihood_Gen_SSE (TreeNode *p, int division, int chain, MrBFlt *lnL, int whichSitePats);
124 int Likelihood_NUC4 (TreeNode *p, int division, int chain, MrBFlt *lnL, int whichSitePats);
126 int Likelihood_NUC4_FMA (TreeNode *p, int division, int chain, MrBFlt *lnL, int whichSitePats…
135 int Likelihood_NY98 (TreeNode *p, int division, int chain, MrBFlt *lnL, int whichSitePats);
139 int Likelihood_Pars (TreeNode *p, int division, int chain, MrBFlt *lnL, int whichSitePats);
140 int Likelihood_ParsStd (TreeNode *p, int division, int chain, MrBFlt *lnL, int whichSitePats);
141 int Likelihood_Res (TreeNode *p, int division, int chain, MrBFlt *lnL, int whichSitePats);
143 int Likelihood_Res_SSE (TreeNode *p, int division, int chain, MrBFlt *lnL, int whichSitePats);
[all …]
H A Dmbbeagle.h23 int TreeLikelihood_Beagle (Tree *t, int division, int chain, MrBFlt *lnL, int whichSitePats);
34 …eagleMultiPartition (int* divisions, int divisionCount, int chain, MrBFlt *lnL, int whichSitePats);
H A Dlikelihood.c5653 k = whichSitePats; /* FIXME: Not used (from clang static analyzer) */ in Likelihood_Adgamma()
5777 nSitesOfPat = numSitesOfPat + (whichSitePats*numCompressedChars) + m->compCharStart; in Likelihood_Gen()
5986 nSitesOfPat = numSitesOfPat + (whichSitePats*numCompressedChars) + m->compCharStart; in Likelihood_Gen_SSE()
6142 nSitesOfPat = numSitesOfPat + (whichSitePats*numCompressedChars) + m->compCharStart; in Likelihood_Gen_GibbsGamma()
6269 nSitesOfPat = numSitesOfPat + (whichSitePats*numCompressedChars) + m->compCharStart; in Likelihood_NUC4()
6383 nSitesOfPat = numSitesOfPat + (whichSitePats*numCompressedChars) + m->compCharStart; in Likelihood_NUC4_GibbsGamma()
6653 nSitesOfPat = numSitesOfPat + (whichSitePats*numCompressedChars) + m->compCharStart; in Likelihood_NUC4_FMA()
6817 nSitesOfPat = numSitesOfPat + (whichSitePats*numCompressedChars) + m->compCharStart; in Likelihood_NUC4_AVX()
6989 nSitesOfPat = numSitesOfPat + (whichSitePats*numCompressedChars) + m->compCharStart; in Likelihood_NUC4_SSE()
7139 nSitesOfPat = numSitesOfPat + (whichSitePats*numCompressedChars) + m->compCharStart; in Likelihood_NY98()
[all …]
H A Dmbbeagle.c1121 int TreeLikelihood_Beagle (Tree *t, int division, int chain, MrBFlt *lnL, int whichSitePats) in TreeLikelihood_Beagle() argument
1220 nSitesOfPat = numSitesOfPat + (whichSitePats*numCompressedChars) + m->compCharStart; in TreeLikelihood_Beagle()
2616 …BeagleMultiPartition (int* divisions, int divisionCount, int chain, MrBFlt *lnL, int whichSitePats) in TreeLikelihood_BeagleMultiPartition() argument
2902 nSitesOfPat = numSitesOfPat + (whichSitePats*numCompressedChars) + m->compCharStart; in TreeLikelihood_BeagleMultiPartition()