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Searched refs:withextras (Results 1 – 4 of 4) sorted by relevance

/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/gnomon/
H A Dgnomon_model.hpp180 virtual TSignedSeqRange operator()(TSignedSeqRange r, bool withextras = true) const = 0;
541 …int FShiftedLen(TSignedSeqRange ab, bool withextras = true) const; // won't work if a/b is inse…
542 …ignedSeqPos a, TSignedSeqPos b, bool withextras = true) const { return FShiftedLen(TSignedSeqRang… in FShiftedLen() argument
651 …nge orig_range, bool withextras = true) const { return MapRangeOrigToEdited(orig_range, withextras… in MapRangeOrigToEdited() argument
652 … TSignedSeqRange MapRangeEditedToOrig(TSignedSeqRange edited_range, bool withextras = true) const;
656 int FShiftedLen(TSignedSeqRange ab, bool withextras = true) const;
657 …ignedSeqPos a, TSignedSeqPos b, bool withextras = true) const { return FShiftedLen(TSignedSeqRange… in FShiftedLen() argument
719 …gnMap::SMapRange>& a, const vector<CAlignMap::SMapRange>& b, TSignedSeqRange r, bool withextras ) { in MapRangeAtoB() argument
720 … return MapRangeAtoB(a, b, r, withextras?eLeftEnd:eSinglePoint, withextras?eRightEnd:eSinglePoint); in MapRangeAtoB()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/gnomon/
H A Dgnomon_seq.cpp950 TSignedSeqRange CAlignMap::MapRangeEditedToOrig(TSignedSeqRange edited_range, bool withextras) cons… in MapRangeEditedToOrig()
974 return MapRangeAtoB(m_edited_ranges, m_orig_ranges, edited_range, withextras); in MapRangeEditedToOrig()
989 int CAlignMap::FShiftedLen(TSignedSeqRange ab, bool withextras) const { in FShiftedLen()
991 int len = MapRangeOrigToEdited(ab, withextras).GetLength(); in FShiftedLen()
H A Dscore.cpp202 TSignedSeqRange operator() (TSignedSeqRange r, bool withextras = true) const in operator ()()
206 return m_seq_map.MapRangeOrigToEdited(r, withextras); in operator ()()
H A Dgnomon_model.cpp926 int CGeneModel::FShiftedLen(TSignedSeqRange ab, bool withextras) const in FShiftedLen()
933 return GetAlignMap().FShiftedLen(ab, withextras); in FShiftedLen()