| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/align/nw/ |
| H A D | nw_spliced_aligner32.cpp | 75 x_Set('A', 'A', 0x47); // 3 ; 1, 2, 3 in CDonorAcceptorMatrix()
79 x_Set('G', 'A', 0x33); // 1, 2 ; in CDonorAcceptorMatrix()
80 x_Set('G', 'G', 0x33); // 1, 2 ; 1, 2 in CDonorAcceptorMatrix()
81 x_Set('G', 'T', 0x70); // 1, 2, 3 ; in CDonorAcceptorMatrix()
83 x_Set('T', 'A', 0x00); // ; in CDonorAcceptorMatrix()
84 x_Set('T', 'G', 0x03); // ; 1, 2 in CDonorAcceptorMatrix()
85 x_Set('T', 'T', 0x50); // 1, 3 ; in CDonorAcceptorMatrix()
87 x_Set('C', 'A', 0x00); // ; in CDonorAcceptorMatrix()
88 x_Set('C', 'G', 0x03); // ; 1, 2 in CDonorAcceptorMatrix()
89 x_Set('C', 'T', 0x50); // 1, 3 ; in CDonorAcceptorMatrix()
[all …]
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/app/blastdb/ |
| H A D | masked_range_set.hpp | 52 x_CombineLocs(x_Set(algo_id, CSeq_id_Handle::GetHandle(id)), v); in Insert()
64 CConstRef<CSeq_loc> & x_Set(int algo_id, CSeq_id_Handle id);
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| H A D | masked_range_set.cpp | 96 CConstRef<CSeq_loc> & CMaskedRangeSet::x_Set(int algo_id, CSeq_id_Handle idh) in x_Set() function in CMaskedRangeSet
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/blastdb/ |
| H A D | masked_range_set.hpp | 52 x_CombineLocs(x_Set(algo_id, CSeq_id_Handle::GetHandle(id)), v); in Insert()
64 CConstRef<CSeq_loc> & x_Set(int algo_id, CSeq_id_Handle id);
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| H A D | masked_range_set.cpp | 96 CConstRef<CSeq_loc> & CMaskedRangeSet::x_Set(int algo_id, CSeq_id_Handle idh) in x_Set() function in CMaskedRangeSet
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/ |
| H A D | scope_transaction.cpp | 52 x_Set( *impl.CreateTransaction() ); in BEGIN_SCOPE()
84 void CScopeTransaction::x_Set(IScopeTransaction_Impl& impl) in x_Set() function in CScopeTransaction
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| H A D | seq_annot_handle.cpp | 58 void CSeq_annot_Handle::x_Set(const CSeq_annot_Info& info, in x_Set() function in CSeq_annot_Handle
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| H A D | annot_collector.cpp | 2996 sah.x_Set(annot_info, tseh); in x_SearchObjects()
3301 sah.x_Set(seq_annot, tseh); in x_SearchRange()
3350 sah.x_Set(sa_info, tseh); in x_SearchRange()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objmgr/ |
| H A D | scope_transaction.cpp | 52 x_Set( *impl.CreateTransaction() ); in BEGIN_SCOPE()
84 void CScopeTransaction::x_Set(IScopeTransaction_Impl& impl) in x_Set() function in CScopeTransaction
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| H A D | seq_annot_handle.cpp | 58 void CSeq_annot_Handle::x_Set(const CSeq_annot_Info& info, in x_Set() function in CSeq_annot_Handle
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| H A D | annot_collector.cpp | 2996 sah.x_Set(annot_info, tseh); in x_SearchObjects()
3301 sah.x_Set(seq_annot, tseh); in x_SearchRange()
3350 sah.x_Set(sa_info, tseh); in x_SearchRange()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/util/ |
| H A D | static_set.hpp | 586 x_Set(arr, sizeof(arr), file, line, warn); in CStaticArraySearchBase()
597 x_Set(arr, sizeof(arr), file, line, warn); in CStaticArraySearchBase()
608 x_Set(array_ptr, array_size, file, line, warn); in CStaticArraySearchBase()
619 x_Set(array_ptr, array_size, file, line, warn); in CStaticArraySearchBase()
734 void x_Set(const value_type* array_ptr, size_t array_size, in x_Set() function in CStaticArraySearchBase
758 void x_Set(const Type* array2_ptr, size_t array2_size, in x_Set() function in CStaticArraySearchBase
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/util/ |
| H A D | static_set.hpp | 586 x_Set(arr, sizeof(arr), file, line, warn); in CStaticArraySearchBase()
597 x_Set(arr, sizeof(arr), file, line, warn); in CStaticArraySearchBase()
608 x_Set(array_ptr, array_size, file, line, warn); in CStaticArraySearchBase()
619 x_Set(array_ptr, array_size, file, line, warn); in CStaticArraySearchBase()
734 void x_Set(const value_type* array_ptr, size_t array_size, in x_Set() function in CStaticArraySearchBase
758 void x_Set(const Type* array2_ptr, size_t array2_size, in x_Set() function in CStaticArraySearchBase
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objmgr/ |
| H A D | scope_transaction.hpp | 86 void x_Set(IScopeTransaction_Impl&);
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| H A D | seq_annot_handle.hpp | 201 void x_Set(const CSeq_annot_Info& annot, const CTSE_Handle& tse);
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objmgr/ |
| H A D | scope_transaction.hpp | 86 void x_Set(IScopeTransaction_Impl&);
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| H A D | seq_annot_handle.hpp | 201 void x_Set(const CSeq_annot_Info& annot, const CTSE_Handle& tse);
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/corelib/ |
| H A D | ncbireg.hpp | 558 virtual bool x_Set(const string& section, const string& name,
611 bool x_Set(const string& section, const string& name,
772 bool x_Set(const string& section, const string& name,
875 bool x_Set(const string& section, const string& name,
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| H A D | env_reg.hpp | 125 bool x_Set(const string& section, const string& name,
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/corelib/ |
| H A D | ncbireg.hpp | 558 virtual bool x_Set(const string& section, const string& name,
611 bool x_Set(const string& section, const string& name,
772 bool x_Set(const string& section, const string& name,
875 bool x_Set(const string& section, const string& name,
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| H A D | env_reg.hpp | 125 bool x_Set(const string& section, const string& name,
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/corelib/ |
| H A D | env_reg.cpp | 220 bool CEnvironmentRegistry::x_Set(const string& section, const string& name, in x_Set() function in CEnvironmentRegistry
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| H A D | ncbireg.cpp | 857 if (x_Set(clean_section, clean_name, value.substr(beg, end - beg + 1), in Set()
1060 bool CMemoryRegistry::x_Set(const string& section, const string& name, in x_Set() function in CMemoryRegistry
1511 bool CTwoLayerRegistry::x_Set(const string& section, const string& name, in x_Set() function in CTwoLayerRegistry
2029 bool CCompoundRWRegistry::x_Set(const string& section, const string& name, in x_Set() function in CCompoundRWRegistry
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/corelib/ |
| H A D | env_reg.cpp | 220 bool CEnvironmentRegistry::x_Set(const string& section, const string& name, in x_Set() function in CEnvironmentRegistry
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| H A D | ncbireg.cpp | 857 if (x_Set(clean_section, clean_name, value.substr(beg, end - beg + 1), in Set()
1060 bool CMemoryRegistry::x_Set(const string& section, const string& name, in x_Set() function in CMemoryRegistry
1511 bool CTwoLayerRegistry::x_Set(const string& section, const string& name, in x_Set() function in CTwoLayerRegistry
2029 bool CCompoundRWRegistry::x_Set(const string& section, const string& name, in x_Set() function in CCompoundRWRegistry
|