/dports/science/py-nilearn/nilearn-0.8.1/examples/ |
H A D | plot_single_subject_single_run.py | 194 z_map = fmri_glm.compute_contrast(active_minus_rest, variable 207 plot_stat_map(z_map, bg_img=mean_img, threshold=3.0, 224 plot_stat_map(z_map, bg_img=mean_img, threshold=threshold, 237 z_map, alpha=.05, height_control='bonferroni') 239 plot_stat_map(z_map, bg_img=mean_img, threshold=threshold, 252 plot_stat_map(z_map, bg_img=mean_img, threshold=threshold, 265 z_map, alpha=.05, height_control='fdr', cluster_threshold=10) 275 z_map.to_filename(join(outdir, 'active_vs_rest_z_map.nii.gz')) 282 table = get_clusters_table(z_map, stat_threshold=threshold, 312 z_map = fmri_glm.compute_contrast(effects_of_interest, variable [all …]
|
/dports/science/py-nilearn/nilearn-0.8.1/examples/04_glm_first_level/ |
H A D | plot_fiac_analysis.py | 105 z_map = fmri_glm.compute_contrast( variable 110 z_map.to_filename(z_image_path) 123 z_map = fmri_glm.compute_contrast( variable 126 z_map, bg_img=mean_img_, threshold=3.0, 133 z_map = fmri_glm.compute_contrast( variable 136 z_map, bg_img=mean_img_, threshold=3.0, 143 z_map = fmri_glm.compute_contrast( variable 146 z_map, bg_img=mean_img_, threshold=3.0,
|
H A D | plot_bids_features.py | 106 z_map = model.compute_contrast('StopSuccess - Go') variable 119 plotting.plot_glass_brain(z_map, colorbar=True, threshold=norm.isf(0.001), 128 plot_img_comparison([z_map], [fsl_z_map], model.masker_, 138 plotting.plot_glass_brain(z_map, colorbar=True, threshold=norm.isf(0.001), 147 print(get_clusters_table(z_map, norm.isf(0.001), 10).to_latex())
|
H A D | plot_first_level_details.py | 184 z_map = first_level_model.compute_contrast( 187 z_map, display_mode='z', threshold=3.0, title=contrast_id, 308 z_map = first_level_model.compute_contrast( variable 311 z_map, display_mode='z', threshold=3.0, title='effect of time derivatives') 322 z_map = first_level_model.compute_contrast( variable 325 z_map, display_mode='z', threshold=3.0,
|
H A D | plot_predictions_residuals.py | 63 z_map = fmri_glm.compute_contrast('active - rest') variable 65 plotting.plot_stat_map(z_map, bg_img=mean_img, threshold=3.1) 73 table = get_clusters_table(z_map, stat_threshold=3.1, 104 z_map, cut_coords=[coords[i][2]], threshold=3.1, figure=fig1,
|
H A D | plot_adhd_dmn.py | 65 z_map = first_level_model.compute_contrast(contrasts['seed_based_glm'], variable 70 display = plotting.plot_stat_map(z_map, threshold=3.0, title='Seed based GLM',
|
H A D | plot_spm_multimodal_faces.py | 121 z_map = fmri_glm.compute_contrast( variable 127 z_map, bg_img=mean_image, threshold=3.0, display_mode='z',
|
H A D | plot_fir_model.py | 111 z_map = first_level_model.compute_contrast( variable 114 z_map, display_mode='z', threshold=3.0, title=contrast_id, axes=ax,
|
/dports/graphics/ImageMagick6/ImageMagick-6.9.12-34/magick/ |
H A D | colorspace.c | 297 *z_map; in RGBTransformImage() local 879 sizeof(*z_map)); in RGBTransformImage() 889 z_map=(TransformPacket *) RelinquishMagickMemory(z_map); in RGBTransformImage() 1058 z_map[i].x=0.002052*i; in RGBTransformImage() 1059 z_map[i].y=0.009768*i; in RGBTransformImage() 1060 z_map[i].z=(-0.001530)*i; in RGBTransformImage() 1218 z_map=(TransformPacket *) RelinquishMagickMemory(z_map); in RGBTransformImage() 1963 *z_map; in TransformRGBImage() local 2545 sizeof(*z_map)); in TransformRGBImage() 2551 z_map=(TransformPacket *) RelinquishMagickMemory(z_map); in TransformRGBImage() [all …]
|
/dports/graphics/ImageMagick6-nox11/ImageMagick-6.9.12-34/magick/ |
H A D | colorspace.c | 297 *z_map; in RGBTransformImage() local 879 sizeof(*z_map)); in RGBTransformImage() 889 z_map=(TransformPacket *) RelinquishMagickMemory(z_map); in RGBTransformImage() 1058 z_map[i].x=0.002052*i; in RGBTransformImage() 1059 z_map[i].y=0.009768*i; in RGBTransformImage() 1060 z_map[i].z=(-0.001530)*i; in RGBTransformImage() 1218 z_map=(TransformPacket *) RelinquishMagickMemory(z_map); in RGBTransformImage() 1963 *z_map; in TransformRGBImage() local 2545 sizeof(*z_map)); in TransformRGBImage() 2551 z_map=(TransformPacket *) RelinquishMagickMemory(z_map); in TransformRGBImage() [all …]
|
/dports/science/py-nilearn/nilearn-0.8.1/examples/05_glm_second_level/ |
H A D | plot_oasis.py | 93 z_map = second_level_model.compute_contrast(second_level_contrast=[1, 0, 0], variable 101 z_map, alpha=.05, height_control='fdr') 105 z_map, threshold=threshold, colorbar=True, display_mode='z', 114 z_map = second_level_model.compute_contrast(second_level_contrast='sex', variable 117 z_map, alpha=.05, height_control='fdr') 119 z_map, threshold=threshold, colorbar=True,
|
H A D | plot_thresholding.py | 45 z_map = second_level_model.compute_contrast(output_type='z_score') variable 52 z_map, alpha=.001, height_control='fpr', cluster_threshold=10) 57 z_map, alpha=.05, height_control='fdr') 65 z_map, alpha=.05, height_control='bonferroni') 74 display = plotting.plot_stat_map(z_map, title='Raw z map')
|
H A D | plot_proportion_activated_voxels.py | 49 z_map = second_level_model.compute_contrast(output_type='z_score') variable 59 z_map, threshold=[3, 4, 5], alpha=.05) 67 z_map, threshold=p001_uncorrected, colorbar=True, display_mode='z',
|
H A D | plot_second_level_association_test.py | 63 z_map = model.compute_contrast('fluency', output_type='z_score') variable 68 _, threshold = threshold_stats_img(z_map, alpha=.05, height_control='fdr') 74 z_map, threshold=threshold, colorbar=True,
|
H A D | plot_second_level_one_sample_test.py | 71 z_map = second_level_model.compute_contrast(output_type='z_score') variable 79 z_map, threshold=p001_unc, colorbar=True, display_mode='z', plot_abs=False,
|
/dports/science/py-nilearn/nilearn-0.8.1/nilearn/plotting/tests/ |
H A D | test_find_cuts.py | 14 x_map, y_map, z_map = 50, 10, 40 15 data[x_map - 30:x_map + 30, y_map - 3:y_map + 3, z_map - 10:z_map + 10] = 1 25 (x_map, y_map, z_map), 36 (x_map / 2., y_map / 3., z_map / 4.), 110 x_map, y_map, z_map = 25, 5, 20 111 data[x_map - 15:x_map + 15, y_map - 3:y_map + 3, z_map - 10:z_map + 10] = 1 166 x_map, y_map, z_map = 25, 5, 20 167 data[x_map - 15:x_map + 15, y_map - 3:y_map + 3, z_map - 10:z_map + 10] = 1 181 x_map, y_map, z_map = 25, 5, 20 182 data[x_map - 15:x_map + 15, y_map - 3:y_map + 3, z_map - 10:z_map + 10] = 1
|
H A D | test_img_plotting.py | 99 x_map, y_map, z_map = coord_transform(x, y, z, 102 int(z_map) - 10:int(z_map) + 10] = 1 125 x_map, y_map, z_map = coord_transform(x, y, z, 128 int(z_map) - 10:int(z_map) + 10] = 1 1182 x_map, y_map, z_map = coord_transform(x, y, z, np.linalg.inv(affine)) 1186 int(z_map) - 1:int(z_map) + 1] = 1
|
/dports/graphics/ImageMagick7/ImageMagick-7.1.0-19/MagickCore/ |
H A D | colorspace.c | 483 *z_map; in sRGBTransformImage() local 1095 sizeof(*z_map)); in sRGBTransformImage() 1105 z_map=(TransformPacket *) RelinquishMagickMemory(z_map); in sRGBTransformImage() 1226 z_map[i].x=0.002052*i; in sRGBTransformImage() 1227 z_map[i].y=0.009768*i; in sRGBTransformImage() 1228 z_map[i].z=(-0.001530)*i; in sRGBTransformImage() 1383 z_map=(TransformPacket *) RelinquishMagickMemory(z_map); in sRGBTransformImage() 2065 *z_map; in TransformsRGBImage() local 2678 sizeof(*z_map)); in TransformsRGBImage() 2684 z_map=(TransformPacket *) RelinquishMagickMemory(z_map); in TransformsRGBImage() [all …]
|
/dports/graphics/ImageMagick7-nox11/ImageMagick-7.1.0-19/MagickCore/ |
H A D | colorspace.c | 483 *z_map; in sRGBTransformImage() local 1095 sizeof(*z_map)); in sRGBTransformImage() 1105 z_map=(TransformPacket *) RelinquishMagickMemory(z_map); in sRGBTransformImage() 1226 z_map[i].x=0.002052*i; in sRGBTransformImage() 1227 z_map[i].y=0.009768*i; in sRGBTransformImage() 1228 z_map[i].z=(-0.001530)*i; in sRGBTransformImage() 1383 z_map=(TransformPacket *) RelinquishMagickMemory(z_map); in sRGBTransformImage() 2065 *z_map; in TransformsRGBImage() local 2678 sizeof(*z_map)); in TransformsRGBImage() 2684 z_map=(TransformPacket *) RelinquishMagickMemory(z_map); in TransformsRGBImage() [all …]
|
/dports/science/py-nilearn/nilearn-0.8.1/nilearn/plotting/ |
H A D | find_cuts.py | 69 x_map, y_map, z_map = DEFAULT_CUT_COORDS 70 return np.asarray(coord_transform(x_map, y_map, z_map, 108 x_map, y_map, z_map = cut_coords 109 return np.asarray(coord_transform(x_map, y_map, z_map, 125 x_map, y_map, z_map = cut_coords 126 return np.asarray(coord_transform(x_map, y_map, z_map, 145 x_map, y_map, z_map = cut_coords 146 return np.asarray(coord_transform(x_map, y_map, z_map, 163 x_map, y_map, z_map = cut_coords + offset 166 return np.asarray(coord_transform(x_map, y_map, z_map,
|
/dports/devel/goffice/goffice-0.10.50/plugins/plot_surface/ |
H A D | gog-matrix.c | 119 GogAxisMap *x_map, *y_map, *z_map; in gog_matrix_view_render() local 160 z_map = gog_axis_map_new (plot->base.axis[GOG_AXIS_COLOR], 0, max); in gog_matrix_view_render() 199 if (gog_axis_map_finite (z_map, z)) { in gog_matrix_view_render() 200 double zc = gog_axis_map_to_view (z_map, z); in gog_matrix_view_render() 216 gog_axis_map_free (z_map); in gog_matrix_view_render()
|
/dports/science/votca/votca-2021.2-18560-gfbe18d971/xtp/xtp-2a31d70/src/libxtp/ |
H A D | segmentmapper.cc | 333 Eigen::Vector3d z_map; in MapMapAtomonMD() local 338 z_map = x_map.cross(y_map); in MapMapAtomonMD() 340 y_map = z_map.cross(x_map); in MapMapAtomonMD() 353 z_map = x_map.cross(y_map); in MapMapAtomonMD() 358 z_map.squaredNorm() < 1e-18) { in MapMapAtomonMD() 365 rot_map.col(2) = z_map.normalized(); in MapMapAtomonMD()
|
/dports/science/votca/votca-2021.2-18560-gfbe18d971/xtp/src/libxtp/ |
H A D | segmentmapper.cc | 333 Eigen::Vector3d z_map; in MapMapAtomonMD() local 338 z_map = x_map.cross(y_map); in MapMapAtomonMD() 340 y_map = z_map.cross(x_map); in MapMapAtomonMD() 353 z_map = x_map.cross(y_map); in MapMapAtomonMD() 358 z_map.squaredNorm() < 1e-18) { in MapMapAtomonMD() 365 rot_map.col(2) = z_map.normalized(); in MapMapAtomonMD()
|
/dports/devel/goffice/goffice-0.10.50/plugins/plot_radar/ |
H A D | gog-radar.c | 802 GogAxisMap *r_map, *c_map, *z_map = NULL; in gog_rt_view_render() local 832 z_map = gog_axis_map_new (GOG_PLOT (model)->axis[GOG_AXIS_COLOR], 0, 6); in gog_rt_view_render() 1026 GOColor color = (gog_axis_map_finite (z_map, z))? in gog_rt_view_render() 1027 get_map_color (gog_axis_map_to_view (z_map, z), hide_outliers): in gog_rt_view_render() 1073 GOColor color = (gog_axis_map_finite (z_map, z_vals[count]))? in gog_rt_view_render() 1074 get_map_color (gog_axis_map_to_view (z_map, z_vals[count]), hide_outliers): in gog_rt_view_render() 1101 gog_axis_map_free (z_map); in gog_rt_view_render()
|
/dports/misc/vxl/vxl-3.3.2/contrib/brl/bseg/bvxm/ |
H A D | bvxm_voxel_world.h | 242 …bool orthorectify(vil_image_view_base_sptr z_map, vpgl_camera_double_sptr z_map_camera, vil_image_… 2375 bool bvxm_voxel_world::orthorectify(vil_image_view_base_sptr z_map, in orthorectify() argument 2397 bvxm_voxel_slab<float> z_slab(z_map->ni(),z_map->nj(),1); in orthorectify() 2398 if (!bvxm_util::img_to_slab(z_map,z_slab)) { in orthorectify() 2448 bvxm_voxel_slab<T> out_slab(z_map->ni(),z_map->nj(),1); in orthorectify()
|