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/dports/science/py-nilearn/nilearn-0.8.1/examples/
H A Dplot_single_subject_single_run.py194 z_map = fmri_glm.compute_contrast(active_minus_rest, variable
207 plot_stat_map(z_map, bg_img=mean_img, threshold=3.0,
224 plot_stat_map(z_map, bg_img=mean_img, threshold=threshold,
237 z_map, alpha=.05, height_control='bonferroni')
239 plot_stat_map(z_map, bg_img=mean_img, threshold=threshold,
252 plot_stat_map(z_map, bg_img=mean_img, threshold=threshold,
265 z_map, alpha=.05, height_control='fdr', cluster_threshold=10)
275 z_map.to_filename(join(outdir, 'active_vs_rest_z_map.nii.gz'))
282 table = get_clusters_table(z_map, stat_threshold=threshold,
312 z_map = fmri_glm.compute_contrast(effects_of_interest, variable
[all …]
/dports/science/py-nilearn/nilearn-0.8.1/examples/04_glm_first_level/
H A Dplot_fiac_analysis.py105 z_map = fmri_glm.compute_contrast( variable
110 z_map.to_filename(z_image_path)
123 z_map = fmri_glm.compute_contrast( variable
126 z_map, bg_img=mean_img_, threshold=3.0,
133 z_map = fmri_glm.compute_contrast( variable
136 z_map, bg_img=mean_img_, threshold=3.0,
143 z_map = fmri_glm.compute_contrast( variable
146 z_map, bg_img=mean_img_, threshold=3.0,
H A Dplot_bids_features.py106 z_map = model.compute_contrast('StopSuccess - Go') variable
119 plotting.plot_glass_brain(z_map, colorbar=True, threshold=norm.isf(0.001),
128 plot_img_comparison([z_map], [fsl_z_map], model.masker_,
138 plotting.plot_glass_brain(z_map, colorbar=True, threshold=norm.isf(0.001),
147 print(get_clusters_table(z_map, norm.isf(0.001), 10).to_latex())
H A Dplot_first_level_details.py184 z_map = first_level_model.compute_contrast(
187 z_map, display_mode='z', threshold=3.0, title=contrast_id,
308 z_map = first_level_model.compute_contrast( variable
311 z_map, display_mode='z', threshold=3.0, title='effect of time derivatives')
322 z_map = first_level_model.compute_contrast( variable
325 z_map, display_mode='z', threshold=3.0,
H A Dplot_predictions_residuals.py63 z_map = fmri_glm.compute_contrast('active - rest') variable
65 plotting.plot_stat_map(z_map, bg_img=mean_img, threshold=3.1)
73 table = get_clusters_table(z_map, stat_threshold=3.1,
104 z_map, cut_coords=[coords[i][2]], threshold=3.1, figure=fig1,
H A Dplot_adhd_dmn.py65 z_map = first_level_model.compute_contrast(contrasts['seed_based_glm'], variable
70 display = plotting.plot_stat_map(z_map, threshold=3.0, title='Seed based GLM',
H A Dplot_spm_multimodal_faces.py121 z_map = fmri_glm.compute_contrast( variable
127 z_map, bg_img=mean_image, threshold=3.0, display_mode='z',
H A Dplot_fir_model.py111 z_map = first_level_model.compute_contrast( variable
114 z_map, display_mode='z', threshold=3.0, title=contrast_id, axes=ax,
/dports/graphics/ImageMagick6/ImageMagick-6.9.12-34/magick/
H A Dcolorspace.c297 *z_map; in RGBTransformImage() local
879 sizeof(*z_map)); in RGBTransformImage()
889 z_map=(TransformPacket *) RelinquishMagickMemory(z_map); in RGBTransformImage()
1058 z_map[i].x=0.002052*i; in RGBTransformImage()
1059 z_map[i].y=0.009768*i; in RGBTransformImage()
1060 z_map[i].z=(-0.001530)*i; in RGBTransformImage()
1218 z_map=(TransformPacket *) RelinquishMagickMemory(z_map); in RGBTransformImage()
1963 *z_map; in TransformRGBImage() local
2545 sizeof(*z_map)); in TransformRGBImage()
2551 z_map=(TransformPacket *) RelinquishMagickMemory(z_map); in TransformRGBImage()
[all …]
/dports/graphics/ImageMagick6-nox11/ImageMagick-6.9.12-34/magick/
H A Dcolorspace.c297 *z_map; in RGBTransformImage() local
879 sizeof(*z_map)); in RGBTransformImage()
889 z_map=(TransformPacket *) RelinquishMagickMemory(z_map); in RGBTransformImage()
1058 z_map[i].x=0.002052*i; in RGBTransformImage()
1059 z_map[i].y=0.009768*i; in RGBTransformImage()
1060 z_map[i].z=(-0.001530)*i; in RGBTransformImage()
1218 z_map=(TransformPacket *) RelinquishMagickMemory(z_map); in RGBTransformImage()
1963 *z_map; in TransformRGBImage() local
2545 sizeof(*z_map)); in TransformRGBImage()
2551 z_map=(TransformPacket *) RelinquishMagickMemory(z_map); in TransformRGBImage()
[all …]
/dports/science/py-nilearn/nilearn-0.8.1/examples/05_glm_second_level/
H A Dplot_oasis.py93 z_map = second_level_model.compute_contrast(second_level_contrast=[1, 0, 0], variable
101 z_map, alpha=.05, height_control='fdr')
105 z_map, threshold=threshold, colorbar=True, display_mode='z',
114 z_map = second_level_model.compute_contrast(second_level_contrast='sex', variable
117 z_map, alpha=.05, height_control='fdr')
119 z_map, threshold=threshold, colorbar=True,
H A Dplot_thresholding.py45 z_map = second_level_model.compute_contrast(output_type='z_score') variable
52 z_map, alpha=.001, height_control='fpr', cluster_threshold=10)
57 z_map, alpha=.05, height_control='fdr')
65 z_map, alpha=.05, height_control='bonferroni')
74 display = plotting.plot_stat_map(z_map, title='Raw z map')
H A Dplot_proportion_activated_voxels.py49 z_map = second_level_model.compute_contrast(output_type='z_score') variable
59 z_map, threshold=[3, 4, 5], alpha=.05)
67 z_map, threshold=p001_uncorrected, colorbar=True, display_mode='z',
H A Dplot_second_level_association_test.py63 z_map = model.compute_contrast('fluency', output_type='z_score') variable
68 _, threshold = threshold_stats_img(z_map, alpha=.05, height_control='fdr')
74 z_map, threshold=threshold, colorbar=True,
H A Dplot_second_level_one_sample_test.py71 z_map = second_level_model.compute_contrast(output_type='z_score') variable
79 z_map, threshold=p001_unc, colorbar=True, display_mode='z', plot_abs=False,
/dports/science/py-nilearn/nilearn-0.8.1/nilearn/plotting/tests/
H A Dtest_find_cuts.py14 x_map, y_map, z_map = 50, 10, 40
15 data[x_map - 30:x_map + 30, y_map - 3:y_map + 3, z_map - 10:z_map + 10] = 1
25 (x_map, y_map, z_map),
36 (x_map / 2., y_map / 3., z_map / 4.),
110 x_map, y_map, z_map = 25, 5, 20
111 data[x_map - 15:x_map + 15, y_map - 3:y_map + 3, z_map - 10:z_map + 10] = 1
166 x_map, y_map, z_map = 25, 5, 20
167 data[x_map - 15:x_map + 15, y_map - 3:y_map + 3, z_map - 10:z_map + 10] = 1
181 x_map, y_map, z_map = 25, 5, 20
182 data[x_map - 15:x_map + 15, y_map - 3:y_map + 3, z_map - 10:z_map + 10] = 1
H A Dtest_img_plotting.py99 x_map, y_map, z_map = coord_transform(x, y, z,
102 int(z_map) - 10:int(z_map) + 10] = 1
125 x_map, y_map, z_map = coord_transform(x, y, z,
128 int(z_map) - 10:int(z_map) + 10] = 1
1182 x_map, y_map, z_map = coord_transform(x, y, z, np.linalg.inv(affine))
1186 int(z_map) - 1:int(z_map) + 1] = 1
/dports/graphics/ImageMagick7/ImageMagick-7.1.0-19/MagickCore/
H A Dcolorspace.c483 *z_map; in sRGBTransformImage() local
1095 sizeof(*z_map)); in sRGBTransformImage()
1105 z_map=(TransformPacket *) RelinquishMagickMemory(z_map); in sRGBTransformImage()
1226 z_map[i].x=0.002052*i; in sRGBTransformImage()
1227 z_map[i].y=0.009768*i; in sRGBTransformImage()
1228 z_map[i].z=(-0.001530)*i; in sRGBTransformImage()
1383 z_map=(TransformPacket *) RelinquishMagickMemory(z_map); in sRGBTransformImage()
2065 *z_map; in TransformsRGBImage() local
2678 sizeof(*z_map)); in TransformsRGBImage()
2684 z_map=(TransformPacket *) RelinquishMagickMemory(z_map); in TransformsRGBImage()
[all …]
/dports/graphics/ImageMagick7-nox11/ImageMagick-7.1.0-19/MagickCore/
H A Dcolorspace.c483 *z_map; in sRGBTransformImage() local
1095 sizeof(*z_map)); in sRGBTransformImage()
1105 z_map=(TransformPacket *) RelinquishMagickMemory(z_map); in sRGBTransformImage()
1226 z_map[i].x=0.002052*i; in sRGBTransformImage()
1227 z_map[i].y=0.009768*i; in sRGBTransformImage()
1228 z_map[i].z=(-0.001530)*i; in sRGBTransformImage()
1383 z_map=(TransformPacket *) RelinquishMagickMemory(z_map); in sRGBTransformImage()
2065 *z_map; in TransformsRGBImage() local
2678 sizeof(*z_map)); in TransformsRGBImage()
2684 z_map=(TransformPacket *) RelinquishMagickMemory(z_map); in TransformsRGBImage()
[all …]
/dports/science/py-nilearn/nilearn-0.8.1/nilearn/plotting/
H A Dfind_cuts.py69 x_map, y_map, z_map = DEFAULT_CUT_COORDS
70 return np.asarray(coord_transform(x_map, y_map, z_map,
108 x_map, y_map, z_map = cut_coords
109 return np.asarray(coord_transform(x_map, y_map, z_map,
125 x_map, y_map, z_map = cut_coords
126 return np.asarray(coord_transform(x_map, y_map, z_map,
145 x_map, y_map, z_map = cut_coords
146 return np.asarray(coord_transform(x_map, y_map, z_map,
163 x_map, y_map, z_map = cut_coords + offset
166 return np.asarray(coord_transform(x_map, y_map, z_map,
/dports/devel/goffice/goffice-0.10.50/plugins/plot_surface/
H A Dgog-matrix.c119 GogAxisMap *x_map, *y_map, *z_map; in gog_matrix_view_render() local
160 z_map = gog_axis_map_new (plot->base.axis[GOG_AXIS_COLOR], 0, max); in gog_matrix_view_render()
199 if (gog_axis_map_finite (z_map, z)) { in gog_matrix_view_render()
200 double zc = gog_axis_map_to_view (z_map, z); in gog_matrix_view_render()
216 gog_axis_map_free (z_map); in gog_matrix_view_render()
/dports/science/votca/votca-2021.2-18560-gfbe18d971/xtp/xtp-2a31d70/src/libxtp/
H A Dsegmentmapper.cc333 Eigen::Vector3d z_map; in MapMapAtomonMD() local
338 z_map = x_map.cross(y_map); in MapMapAtomonMD()
340 y_map = z_map.cross(x_map); in MapMapAtomonMD()
353 z_map = x_map.cross(y_map); in MapMapAtomonMD()
358 z_map.squaredNorm() < 1e-18) { in MapMapAtomonMD()
365 rot_map.col(2) = z_map.normalized(); in MapMapAtomonMD()
/dports/science/votca/votca-2021.2-18560-gfbe18d971/xtp/src/libxtp/
H A Dsegmentmapper.cc333 Eigen::Vector3d z_map; in MapMapAtomonMD() local
338 z_map = x_map.cross(y_map); in MapMapAtomonMD()
340 y_map = z_map.cross(x_map); in MapMapAtomonMD()
353 z_map = x_map.cross(y_map); in MapMapAtomonMD()
358 z_map.squaredNorm() < 1e-18) { in MapMapAtomonMD()
365 rot_map.col(2) = z_map.normalized(); in MapMapAtomonMD()
/dports/devel/goffice/goffice-0.10.50/plugins/plot_radar/
H A Dgog-radar.c802 GogAxisMap *r_map, *c_map, *z_map = NULL; in gog_rt_view_render() local
832 z_map = gog_axis_map_new (GOG_PLOT (model)->axis[GOG_AXIS_COLOR], 0, 6); in gog_rt_view_render()
1026 GOColor color = (gog_axis_map_finite (z_map, z))? in gog_rt_view_render()
1027 get_map_color (gog_axis_map_to_view (z_map, z), hide_outliers): in gog_rt_view_render()
1073 GOColor color = (gog_axis_map_finite (z_map, z_vals[count]))? in gog_rt_view_render()
1074 get_map_color (gog_axis_map_to_view (z_map, z_vals[count]), hide_outliers): in gog_rt_view_render()
1101 gog_axis_map_free (z_map); in gog_rt_view_render()
/dports/misc/vxl/vxl-3.3.2/contrib/brl/bseg/bvxm/
H A Dbvxm_voxel_world.h242 …bool orthorectify(vil_image_view_base_sptr z_map, vpgl_camera_double_sptr z_map_camera, vil_image_…
2375 bool bvxm_voxel_world::orthorectify(vil_image_view_base_sptr z_map, in orthorectify() argument
2397 bvxm_voxel_slab<float> z_slab(z_map->ni(),z_map->nj(),1); in orthorectify()
2398 if (!bvxm_util::img_to_slab(z_map,z_slab)) { in orthorectify()
2448 bvxm_voxel_slab<T> out_slab(z_map->ni(),z_map->nj(),1); in orthorectify()

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