| /dports/biology/kallisto/kallisto-0.46.1/ext/htslib/cram/ |
| H A D | mFILE.c | 301 mf->alloced = mf->size; in mfreopen()
322 mf->flush_pos = mf->size; in mfreopen()
357 munmap(mf->data, mf->size); in mfclose()
478 mf->offset = mf->size; in mftruncate()
500 : mf->size - mf->offset; in mfread()
520 mf->offset = mf->size; in mfwrite()
539 mf->size = mf->offset; in mfwrite()
609 mf->offset = mf->size = mf->flush_pos = 0; in mfflush()
627 mf->flush_pos = mf->size; in mfflush()
660 if (mf->size < mf->offset) in mfprintf()
[all …]
|
| /dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/cram/ |
| H A D | mFILE.c | 335 mf->flush_pos = mf->size; in mfreopen()
490 if (mf->offset > mf->size) in mftruncate()
491 mf->offset = mf->size; in mftruncate()
508 if (mf->size <= mf->offset) in mfread()
513 : mf->size - mf->offset; in mfread()
533 mf->offset = mf->size; in mfwrite()
551 if (mf->size < mf->offset) in mfwrite()
552 mf->size = mf->offset; in mfwrite()
559 if (mf->offset < mf->size) { in mfgetc()
622 mf->offset = mf->size = mf->flush_pos = 0; in mfflush()
[all …]
|
| /dports/biology/py-pysam/pysam-0.18.0/htslib/cram/ |
| H A D | mFILE.c | 335 mf->flush_pos = mf->size; in mfreopen()
490 if (mf->offset > mf->size) in mftruncate()
491 mf->offset = mf->size; in mftruncate()
508 if (mf->size <= mf->offset) in mfread()
513 : mf->size - mf->offset; in mfread()
533 mf->offset = mf->size; in mfwrite()
551 if (mf->size < mf->offset) in mfwrite()
552 mf->size = mf->offset; in mfwrite()
559 if (mf->offset < mf->size) { in mfgetc()
622 mf->offset = mf->size = mf->flush_pos = 0; in mfflush()
[all …]
|
| /dports/biology/htslib/htslib-1.14/cram/ |
| H A D | mFILE.c | 335 mf->flush_pos = mf->size; in mfreopen()
490 if (mf->offset > mf->size) in mftruncate()
491 mf->offset = mf->size; in mftruncate()
508 if (mf->size <= mf->offset) in mfread()
513 : mf->size - mf->offset; in mfread()
533 mf->offset = mf->size; in mfwrite()
551 if (mf->size < mf->offset) in mfwrite()
552 mf->size = mf->offset; in mfwrite()
559 if (mf->offset < mf->size) { in mfgetc()
622 mf->offset = mf->size = mf->flush_pos = 0; in mfflush()
[all …]
|
| /dports/biology/vt/vt-0.57721/lib/htslib/cram/ |
| H A D | mFILE.c | 322 mf->flush_pos = mf->size; in mfreopen()
477 if (mf->offset > mf->size) in mftruncate()
478 mf->offset = mf->size; in mftruncate()
495 if (mf->size <= mf->offset) in mfread()
500 : mf->size - mf->offset; in mfread()
520 mf->offset = mf->size; in mfwrite()
538 if (mf->size < mf->offset) in mfwrite()
539 mf->size = mf->offset; in mfwrite()
546 if (mf->offset < mf->size) { in mfgetc()
609 mf->offset = mf->size = mf->flush_pos = 0; in mfflush()
[all …]
|
| /dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/cram/ |
| H A D | mFILE.c | 322 mf->flush_pos = mf->size; in mfreopen()
477 if (mf->offset > mf->size) in mftruncate()
478 mf->offset = mf->size; in mftruncate()
495 if (mf->size <= mf->offset) in mfread()
500 : mf->size - mf->offset; in mfread()
520 mf->offset = mf->size; in mfwrite()
538 if (mf->size < mf->offset) in mfwrite()
539 mf->size = mf->offset; in mfwrite()
546 if (mf->offset < mf->size) { in mfgetc()
609 mf->offset = mf->size = mf->flush_pos = 0; in mfflush()
[all …]
|
| /dports/biology/stacks/stacks-2.4/htslib/cram/ |
| H A D | mFILE.c | 301 mf->alloced = mf->size; in mfreopen()
322 mf->flush_pos = mf->size; in mfreopen()
357 munmap(mf->data, mf->size); in mfclose()
478 mf->offset = mf->size; in mftruncate()
500 : mf->size - mf->offset; in mfread()
520 mf->offset = mf->size; in mfwrite()
533 mf->flush_pos = mf->offset; in mfwrite()
539 mf->size = mf->offset; in mfwrite()
556 mf->data[--mf->offset] = c; in mungetc()
609 mf->offset = mf->size = mf->flush_pos = 0; in mfflush()
[all …]
|
| /dports/comms/gnokii/gnokii-0.6.31/common/ |
| H A D | readmidi.c | 271 int c = mf->Mf_getc(mf); in egetc()
287 mf->Mf_toberead = read32bit(mf); in readheader()
323 (*mf->Mf_trackstart) (mf); in readtrack()
364 msgadd(mf, egetc(mf)); in readtrack()
376 msgadd(mf, c = egetc(mf)); in readtrack()
392 msgadd(mf, c = egetc(mf)); in readtrack()
396 (*mf->Mf_arbitrary) (mf, msgleng(mf), msg(mf)); in readtrack()
408 (*mf->Mf_trackend) (mf); in readtrack()
451 (*mf->Mf_eot) (mf); in metaevent()
482 (*mf->Mf_sysex) (mf, msgleng(mf), msg(mf)); in sysex()
[all …]
|
| /dports/multimedia/aegisub/aegisub-3.2.2/src/ |
| H A D | MatroskaParser.c | 412 mf->cache->memfree(mf->cache, mf->cpbuf); in errorjmp()
524 rd = mf->cache->read(mf->cache, mf->bufbase, mf->inbuf, IBSZ); in fillbuf()
542 return mf->bufpos < mf->buflen ? (unsigned char)(mf->inbuf[mf->bufpos++]) : nextbuf(mf); in readch()
1618 addCue(mf,mf->pCluster - mf->pSegment,mf->firstTimecode); in parseCues()
2734 mf->Queues = mf->cache->memalloc(mf->cache,mf->nTracks * sizeof(*mf->Queues)); in parseFile()
2817 mf->cache->memfree(mf->cache,mf->Tracks); in mkv_Close()
2823 mf->cache->memfree(mf->cache,mf->Queues); in mkv_Close()
2832 mf->cache->memfree(mf->cache,mf->Cues); in mkv_Close()
2853 mf->cache->memfree(mf->cache,mf->Tags); in mkv_Close()
2855 mf->cache->memfree(mf->cache,mf); in mkv_Close()
[all …]
|
| /dports/biology/iolib/io_lib-io_lib-1-14-10/io_lib/ |
| H A D | mFILE.c | 319 mf->alloced = mf->size; in mfreopen()
340 mf->flush_pos = mf->size; in mfreopen()
387 munmap(mf->data, mf->size); in mfclose()
508 mf->offset = mf->size; in mftruncate()
530 : mf->size - mf->offset; in mfread()
550 mf->offset = mf->size; in mfwrite()
569 mf->size = mf->offset; in mfwrite()
639 mf->offset = mf->size = mf->flush_pos = 0; in mfflush()
657 mf->flush_pos = mf->size; in mfflush()
690 if (mf->size < mf->offset) in mfprintf()
[all …]
|
| /dports/devel/ecgi/ecgi-0.6.3/src/ |
| H A D | memfile.c | 44 mf->pos=mf->used; in mfseek()
57 if(mf->pos>mf->used) mf->used=mf->pos; in mfseek()
78 if(mf->pos+bytesread>mf->used) in mfread()
79 bytesread=mf->used-mf->pos; in mfread()
84 if(mf->pos==mf->used) in mfread()
116 if(mf->pos>=mf->used){ in mfgetc()
117 mf->pos=mf->used; in mfgetc()
163 if(mf->pos>mf->used) in mfprintf()
172 if(fwrite(mf->data, 1, mf->used, f)!=mf->used) in mfMFileToFile()
231 if(mf->pos>mf->used) in mfSetLength()
[all …]
|
| /dports/science/py-pyscf/pyscf-2.0.1/pyscf/pbc/scf/test/ |
| H A D | test_newton.py | 54 mf = scf.newton(mf)
63 mf = scf.newton(mf)
70 mf = scf.newton(mf)
84 mf = scf.newton(mf)
92 mf = scf.newton(mf)
100 mf = scf.newton(mf)
108 mf = scf.newton(mf)
115 mf = scf.newton(mf)
122 mf = scf.newton(mf)
136 mf = scf.newton(mf)
[all …]
|
| /dports/mail/cyrus-imapd30/cyrus-imapd-3.0.16/lib/ |
| H A D | mappedfile.c | 114 buf_init_mmap(&mf->map_buf, /*onceonly*/0, mf->fd, mf->fname, in _ensure_mapped()
138 mf->fd = open(mf->fname, openmode, 0644); in mappedfile_open()
149 mf->fd = open(mf->fname, O_RDWR | O_CREAT, 0644); in mappedfile_open()
170 *mfp = mf; in mappedfile_open()
195 free(mf); in mappedfile_close()
212 if (lock_shared(mf->fd, mf->fname) < 0) { in mappedfile_readlock()
219 lock_unlock(mf->fd, mf->fname); in mappedfile_readlock()
225 lock_unlock(mf->fd, mf->fname); in mappedfile_readlock()
234 lock_unlock(mf->fd, mf->fname); in mappedfile_readlock()
286 r = lock_unlock(mf->fd, mf->fname); in mappedfile_unlock()
[all …]
|
| /dports/mail/cyrus-imapd32/cyrus-imapd-3.2.8/lib/ |
| H A D | mappedfile.c | 93 buf_refresh_mmap(&mf->map_buf, /*onceonly*/0, mf->fd, mf->fname, in _ensure_mapped()
117 mf->fd = open(mf->fname, openmode, 0644); in mappedfile_open()
128 mf->fd = open(mf->fname, O_RDWR | O_CREAT, 0644); in mappedfile_open()
149 *mfp = mf; in mappedfile_open()
174 free(mf); in mappedfile_close()
191 if (lock_shared(mf->fd, mf->fname) < 0) { in mappedfile_readlock()
198 lock_unlock(mf->fd, mf->fname); in mappedfile_readlock()
204 lock_unlock(mf->fd, mf->fname); in mappedfile_readlock()
213 lock_unlock(mf->fd, mf->fname); in mappedfile_readlock()
270 r = lock_unlock(mf->fd, mf->fname); in mappedfile_unlock()
[all …]
|
| /dports/mail/cyrus-imapd34/cyrus-imapd-3.4.2/lib/ |
| H A D | mappedfile.c | 93 buf_refresh_mmap(&mf->map_buf, /*onceonly*/0, mf->fd, mf->fname, in _ensure_mapped()
117 mf->fd = open(mf->fname, openmode, 0644); in mappedfile_open()
129 mf->fd = open(mf->fname, O_RDWR | O_CREAT, 0644); in mappedfile_open()
152 *mfp = mf; in mappedfile_open()
177 free(mf); in mappedfile_close()
194 if (lock_shared(mf->fd, mf->fname) < 0) { in mappedfile_readlock()
203 lock_unlock(mf->fd, mf->fname); in mappedfile_readlock()
210 lock_unlock(mf->fd, mf->fname); in mappedfile_readlock()
220 lock_unlock(mf->fd, mf->fname); in mappedfile_readlock()
279 r = lock_unlock(mf->fd, mf->fname); in mappedfile_unlock()
[all …]
|
| /dports/net/freeswitch/freeswitch-1.10.3.-release/libs/freetdm/src/isdn/ |
| H A D | mfifo.c | 89 mf->first = mf->last = 0; in MFIFOCreate()
116 mf->first = mf->last = 0; in MFIFOClear()
134 if (mf->last != mf->first) in MFIFOGetLBOffset()
158 if (mf->last == mf->first) in MFIFOGetFBOffset()
268 if (mf->first == mf->last) { in MFIFOGetMesPtr()
273 return &mf->buf[mf->ix[mf->last].offset]; in MFIFOGetMesPtr()
292 if (mf->first != mf->last) { in MFIFOKillNext()
316 if (mf->first == mf->last) { in MFIFOGetMesPtrOffset()
342 if (mf->first == mf->last) { in MFIFOGetMesCount()
349 return (mf->ixsize - mf->last) + mf->first; in MFIFOGetMesCount()
[all …]
|
| /dports/databases/percona56-client/percona-server-5.6.51-91.0/storage/tokudb/PerconaFT/third_party/xz-4.999.9beta/src/liblzma/lz/ |
| H A D | lz_encoder.c | 47 assert(mf->read_pos > mf->keep_size_before); in move_window()
82 if (coder->mf.read_pos >= coder->mf.size - coder->mf.keep_size_after) in fill_window()
118 coder->mf.read_limit = coder->mf.write_pos; in fill_window()
124 coder->mf.read_limit = coder->mf.write_pos in fill_window()
143 coder->mf.skip(&coder->mf, pending); in fill_window()
218 mf->size = mf->keep_size_before + reserve + mf->keep_size_after; in lz_encoder_prepare()
336 mf->sons_count = mf->cyclic_size; in lz_encoder_prepare()
352 mf->depth = 16 + (mf->nice_len / 2); in lz_encoder_prepare()
376 mf->offset = mf->cyclic_size; in lz_encoder_init()
400 mf->son = mf->hash + mf->hash_size_sum; in lz_encoder_init()
[all …]
|
| /dports/databases/percona-pam-for-mysql/percona-server-5.6.51-91.0/storage/tokudb/PerconaFT/third_party/xz-4.999.9beta/src/liblzma/lz/ |
| H A D | lz_encoder.c | 47 assert(mf->read_pos > mf->keep_size_before); in move_window()
82 if (coder->mf.read_pos >= coder->mf.size - coder->mf.keep_size_after) in fill_window()
118 coder->mf.read_limit = coder->mf.write_pos; in fill_window()
124 coder->mf.read_limit = coder->mf.write_pos in fill_window()
143 coder->mf.skip(&coder->mf, pending); in fill_window()
218 mf->size = mf->keep_size_before + reserve + mf->keep_size_after; in lz_encoder_prepare()
336 mf->sons_count = mf->cyclic_size; in lz_encoder_prepare()
352 mf->depth = 16 + (mf->nice_len / 2); in lz_encoder_prepare()
376 mf->offset = mf->cyclic_size; in lz_encoder_init()
400 mf->son = mf->hash + mf->hash_size_sum; in lz_encoder_init()
[all …]
|
| /dports/databases/percona57-client/percona-server-5.7.36-39/storage/tokudb/PerconaFT/third_party/xz-4.999.9beta/src/liblzma/lz/ |
| H A D | lz_encoder.c | 47 assert(mf->read_pos > mf->keep_size_before); in move_window()
82 if (coder->mf.read_pos >= coder->mf.size - coder->mf.keep_size_after) in fill_window()
118 coder->mf.read_limit = coder->mf.write_pos; in fill_window()
124 coder->mf.read_limit = coder->mf.write_pos in fill_window()
143 coder->mf.skip(&coder->mf, pending); in fill_window()
218 mf->size = mf->keep_size_before + reserve + mf->keep_size_after; in lz_encoder_prepare()
336 mf->sons_count = mf->cyclic_size; in lz_encoder_prepare()
352 mf->depth = 16 + (mf->nice_len / 2); in lz_encoder_prepare()
376 mf->offset = mf->cyclic_size; in lz_encoder_init()
400 mf->son = mf->hash + mf->hash_size_sum; in lz_encoder_init()
[all …]
|
| /dports/databases/percona57-pam-for-mysql/percona-server-5.7.36-39/storage/tokudb/PerconaFT/third_party/xz-4.999.9beta/src/liblzma/lz/ |
| H A D | lz_encoder.c | 47 assert(mf->read_pos > mf->keep_size_before); in move_window()
82 if (coder->mf.read_pos >= coder->mf.size - coder->mf.keep_size_after) in fill_window()
118 coder->mf.read_limit = coder->mf.write_pos; in fill_window()
124 coder->mf.read_limit = coder->mf.write_pos in fill_window()
143 coder->mf.skip(&coder->mf, pending); in fill_window()
218 mf->size = mf->keep_size_before + reserve + mf->keep_size_after; in lz_encoder_prepare()
336 mf->sons_count = mf->cyclic_size; in lz_encoder_prepare()
352 mf->depth = 16 + (mf->nice_len / 2); in lz_encoder_prepare()
376 mf->offset = mf->cyclic_size; in lz_encoder_init()
400 mf->son = mf->hash + mf->hash_size_sum; in lz_encoder_init()
[all …]
|
| /dports/databases/percona57-server/percona-server-5.7.36-39/storage/tokudb/PerconaFT/third_party/xz-4.999.9beta/src/liblzma/lz/ |
| H A D | lz_encoder.c | 47 assert(mf->read_pos > mf->keep_size_before); in move_window()
82 if (coder->mf.read_pos >= coder->mf.size - coder->mf.keep_size_after) in fill_window()
118 coder->mf.read_limit = coder->mf.write_pos; in fill_window()
124 coder->mf.read_limit = coder->mf.write_pos in fill_window()
143 coder->mf.skip(&coder->mf, pending); in fill_window()
218 mf->size = mf->keep_size_before + reserve + mf->keep_size_after; in lz_encoder_prepare()
336 mf->sons_count = mf->cyclic_size; in lz_encoder_prepare()
352 mf->depth = 16 + (mf->nice_len / 2); in lz_encoder_prepare()
376 mf->offset = mf->cyclic_size; in lz_encoder_init()
400 mf->son = mf->hash + mf->hash_size_sum; in lz_encoder_init()
[all …]
|
| /dports/databases/percona56-server/percona-server-5.6.51-91.0/storage/tokudb/PerconaFT/third_party/xz-4.999.9beta/src/liblzma/lz/ |
| H A D | lz_encoder.c | 47 assert(mf->read_pos > mf->keep_size_before); in move_window()
82 if (coder->mf.read_pos >= coder->mf.size - coder->mf.keep_size_after) in fill_window()
118 coder->mf.read_limit = coder->mf.write_pos; in fill_window()
124 coder->mf.read_limit = coder->mf.write_pos in fill_window()
143 coder->mf.skip(&coder->mf, pending); in fill_window()
218 mf->size = mf->keep_size_before + reserve + mf->keep_size_after; in lz_encoder_prepare()
336 mf->sons_count = mf->cyclic_size; in lz_encoder_prepare()
352 mf->depth = 16 + (mf->nice_len / 2); in lz_encoder_prepare()
376 mf->offset = mf->cyclic_size; in lz_encoder_init()
400 mf->son = mf->hash + mf->hash_size_sum; in lz_encoder_init()
[all …]
|
| /dports/databases/mariadb104-server/mariadb-10.4.24/storage/tokudb/PerconaFT/third_party/xz-4.999.9beta/src/liblzma/lz/ |
| H A D | lz_encoder.c | 47 assert(mf->read_pos > mf->keep_size_before); in move_window()
82 if (coder->mf.read_pos >= coder->mf.size - coder->mf.keep_size_after) in fill_window()
118 coder->mf.read_limit = coder->mf.write_pos; in fill_window()
124 coder->mf.read_limit = coder->mf.write_pos in fill_window()
143 coder->mf.skip(&coder->mf, pending); in fill_window()
218 mf->size = mf->keep_size_before + reserve + mf->keep_size_after; in lz_encoder_prepare()
336 mf->sons_count = mf->cyclic_size; in lz_encoder_prepare()
352 mf->depth = 16 + (mf->nice_len / 2); in lz_encoder_prepare()
376 mf->offset = mf->cyclic_size; in lz_encoder_init()
400 mf->son = mf->hash + mf->hash_size_sum; in lz_encoder_init()
[all …]
|
| /dports/databases/mariadb104-client/mariadb-10.4.24/storage/tokudb/PerconaFT/third_party/xz-4.999.9beta/src/liblzma/lz/ |
| H A D | lz_encoder.c | 47 assert(mf->read_pos > mf->keep_size_before); in move_window()
82 if (coder->mf.read_pos >= coder->mf.size - coder->mf.keep_size_after) in fill_window()
118 coder->mf.read_limit = coder->mf.write_pos; in fill_window()
124 coder->mf.read_limit = coder->mf.write_pos in fill_window()
143 coder->mf.skip(&coder->mf, pending); in fill_window()
218 mf->size = mf->keep_size_before + reserve + mf->keep_size_after; in lz_encoder_prepare()
336 mf->sons_count = mf->cyclic_size; in lz_encoder_prepare()
352 mf->depth = 16 + (mf->nice_len / 2); in lz_encoder_prepare()
376 mf->offset = mf->cyclic_size; in lz_encoder_init()
400 mf->son = mf->hash + mf->hash_size_sum; in lz_encoder_init()
[all …]
|
| /dports/databases/mariadb105-client/mariadb-10.5.15/storage/tokudb/PerconaFT/third_party/xz-4.999.9beta/src/liblzma/lz/ |
| H A D | lz_encoder.c | 47 assert(mf->read_pos > mf->keep_size_before); in move_window()
82 if (coder->mf.read_pos >= coder->mf.size - coder->mf.keep_size_after) in fill_window()
118 coder->mf.read_limit = coder->mf.write_pos; in fill_window()
124 coder->mf.read_limit = coder->mf.write_pos in fill_window()
143 coder->mf.skip(&coder->mf, pending); in fill_window()
218 mf->size = mf->keep_size_before + reserve + mf->keep_size_after; in lz_encoder_prepare()
336 mf->sons_count = mf->cyclic_size; in lz_encoder_prepare()
352 mf->depth = 16 + (mf->nice_len / 2); in lz_encoder_prepare()
376 mf->offset = mf->cyclic_size; in lz_encoder_init()
400 mf->son = mf->hash + mf->hash_size_sum; in lz_encoder_init()
[all …]
|