Searched refs:StrictlyContainedInDels (Results 1 – 1 of 1) sorted by relevance
2280 TInDels StrictlyContainedInDels(const TInDels& indels, const TSignedSeqRange& lim) { in StrictlyContainedInDels() function2338 …if(aj.FrameShifts() != StrictlyContainedInDels(ai.FrameShifts(), aj.Limits())) // not compatibl… in CanIncludeJinI()2555 …if(StrictlyContainedInDels(ai.FrameShifts(), overlap) != StrictlyContainedInDels(aj.FrameShifts()… in LRCanChainItoJ()2795 …if(StrictlyContainedInDels(ai.FrameShifts(), overlap) != StrictlyContainedInDels(aj.FrameShifts()… in RightLeft()3548 …bool samefshifts = (parts[p]->FrameShifts() == StrictlyContainedInDels(ai.FrameShifts(), parts[p]-… in FindOptimalChainForProtein()3559 …if(!parts[p]->isCompatible(ai) || StrictlyContainedInDels(ai.FrameShifts(), overlap) != StrictlyC… in FindOptimalChainForProtein()4068 … if(jtt->FrameShifts() != StrictlyContainedInDels(itt->FrameShifts(), jtt->Limits())) in CombineCompatibleChains()6311 TInDels fs = StrictlyContainedInDels(align.FrameShifts(), *stp); in FindSelenoproteinsClipProteinsToStartStop()