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/dports/audio/libbpm/libbpm-0.3/documentation/latex/
H A Dgroup__dsp.tex187 #include <TFile.h>
214 TFile *rootfile = new TFile( "dsp.root", "recreate" );
/dports/audio/libopenmpt/libopenmpt-0.6.0+release.autotools/soundlib/
H A DUMXTools.cpp108 template <typename TFile>
109 static bool FindNameTableEntryImpl(TFile &file, const FileHeader &fileHeader, const char *name) in FindNameTableEntryImpl()
/dports/audio/py-mutagen/mutagen-1.42.0/tests/
H A Dtest___init__.py546 class TFile(TestCase): class
/dports/biology/emboss/EMBOSS-6.6.0/emboss/
H A Ddbiblast.c187 PMemFile TFile; member
523 ajStrAssignS(&divfiles[jfile], db->TFile->Name); in main()
891 dbiblast_memfclosefile(&db->TFile); in dbiblast_dbfree()
934 PMemFile TFile = NULL; in dbiblast_blastopenlib() local
957 TFile = dbiblast_memfopenfile(tname); in dbiblast_blastopenlib()
959 if(TFile) in dbiblast_blastopenlib()
963 if(!TFile) in dbiblast_blastopenlib()
970 ret->TFile = TFile; in dbiblast_blastopenlib()
977 if(!ret->TFile) in dbiblast_blastopenlib()
1900 dbiblast_memfseek(db->TFile, top + 4*(pos), 0); in dbiblast_loadtable()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objtools/blast/seqdb_writer/
H A Dwritedb_files.hpp163 typedef ofstream TFile; typedef in CWriteDB_File
200 TFile m_RealFile; ///< Actual stream implementing the output file.
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/util/compress/
H A Dcompress.hpp265 typedef void* TFile; typedef in CCompressionFile
298 TFile m_File; ///< File handler.
H A Dtar.hpp391 typedef pair<string, Uint8> TFile; typedef in CTar
392 typedef list<TFile> TFiles;
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/blast/seqdb_writer/
H A Dwritedb_files.hpp163 typedef ofstream TFile; typedef in CWriteDB_File
200 TFile m_RealFile; ///< Actual stream implementing the output file.
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/util/compress/
H A Dcompress.hpp265 typedef void* TFile; typedef in CCompressionFile
298 TFile m_File; ///< File handler.
H A Dtar.hpp391 typedef pair<string, Uint8> TFile; typedef in CTar
392 typedef list<TFile> TFiles;
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/connect/test/
H A Dtest_ncbi_ftp_download.cpp141 void Append(const CTar::TFile* current = 0);
153 CTar::TFile m_Current; // Current file name with size
191 void CDownloadCallbackData::Append(const CTar::TFile* current) in Append()
226 TFile file(current.GetName(), current.GetSize()); in Checkpoint()
328 CTar::TFile file = make_pair(m_Dlcbdata->GetFilename(), filesize); in Run()
356 CTar::TFile file = make_pair(line, (Uint8) 0); in Run()
/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/align/
H A Dalign_base.h477 template <typename TFile, typename TSource, typename TSpec>
479 write(TFile & target,
H A Ddp_traceback_adaptor.h47 template <typename TFile, typename TSeq0Value, typename TSeq1Value>
48 inline void _writeTraceSegmentToFile(TFile & file, TSeq0Value const & seq0Val, TSeq1Value const & s… in _writeTraceSegmentToFile()
182 template <typename TFile, typename TSequenceH, typename TSequenceV, typename TPosition, typename TS…
185 _adaptTraceSegmentsTo(TFile & file, in _adaptTraceSegmentsTo()
/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/consensus/
H A Dconsensus_base.h1132 template<typename TFile, typename TSpec, typename TConfig>
1135 TFile & file, in write()
1148 typename DirectionIterator<TFile, Output>::Type target = directionIterator(file, Output()); in write()
1321 template<typename TFile, typename TSpec, typename TConfig, typename TFilePath>
1323 _convertSimpleReadFile(TFile& /*file*/, in _convertSimpleReadFile() argument
1759 template<typename TFile, typename TSpec, typename TConfig>
1761 _writeCeleraFrg(TFile& file, in _writeCeleraFrg()
1769 typename DirectionIterator<TFile, Output>::Type target = directionIterator(file, Output()); in _writeCeleraFrg()
1824 template<typename TFile, typename TSpec, typename TConfig>
1826 _writeCeleraCgb(TFile& file, in _writeCeleraCgb()
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/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/file/
H A Dfile_base.h226 template < typename TFile, typename TValue, typename TSize, typename TPos >
227 inline bool readAt(TFile & me, TValue *memPtr, TSize const count, TPos const fileOfs) in readAt()
230 typedef typename Position<TFile>::Type pos_t; in readAt()
249 template < typename TFile, typename TValue, typename TSize, typename TPos >
250 inline bool writeAt(TFile & me, TValue const *memPtr, TSize const count, TPos const fileOfs) in writeAt()
253 typedef typename Position<TFile>::Type pos_t; in writeAt()
H A Dfile_mapping.h155 typedef File<Async<> > TFile; typedef
156 typedef typename Size<TFile>::Type TFileSize;
167 TFile file;
204 public Size<typename FileMapping<TSpec>::TFile> {};
362 template <typename TSpec, typename TFile>
364 open(FileMapping<TSpec> &mapping, TFile const &file)
H A Dfile_page.h400 typename TFile,
474 typename TFile,
480 typename TFile,
617 bool readPage(int pageNo, Buffer<TValue, PageFrame<TFile, TSpec> > &pf, TFile &file)
639 bool unmapPage(Buffer<TValue, PageFrame<TFile, TSpec> > &pf, TFile &)
653 bool mapReadPage(Buffer<TValue, PageFrame<TFile, TSpec> > &pf, TFile &file, TSize size)
741 bool writePage(Buffer<TValue, PageFrame<TFile, TSpec> > &pf, int pageNo, TFile &file)
854 bool cancel(Buffer<TValue, PageFrame<TFile, TSpec> > &pf, TFile &file)
871 bool readPage(Buffer<TValue, PageFrame<TFile, Dynamic> > &pf, TFile &file)
881 bool writePage(Buffer<TValue, PageFrame<TFile, Dynamic> > &pf, TFile &file)
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H A Dstring_external.h159 typedef TFile_ TFile; typedef
176 typedef TFile_ TFile; typedef
190 typedef TFile_ TFile; typedef
1113 typedef typename TConfig::TFile TFile;
1117 typedef Buffer<TValue, PageFrame<TFile, Fixed<PAGESIZE> > > TPageFrame;
1123 TFile file;
1165 String(TFile &_file) :
1172 String(const char *fileName, int openMode = DefaultOpenMode<TFile>::VALUE) :
1820 typedef typename TExtString::TFile TFile;
1822 return open(me, fileName, DefaultOpenMode<TFile>::VALUE);
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H A Dstring_mmap.h86 typedef TFile_ TFile; typedef
140 typedef typename TConfig::TFile TFile; typedef
160 String(TFile &_file): in String()
371 typedef typename Size<typename TConfig::TFile>::Type TFileSize;
397 typedef typename Size<typename TConfig::TFile>::Type TFileSize;
428 typedef typename Size<typename TConfig::TFile>::Type TFileSize;
452 typedef typename Size<typename TConfig::TFile>::Type TFileSize;
597 typedef typename String<TValue, MMap<TConfig> >::TFile TFile;
598 return open(me, fileName, DefaultOpenMode<TFile>::VALUE);
603 open(String<TValue, MMap<TConfig> > &me, typename TConfig::TFile file)
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/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/find/
H A Dfind_horspool.h298 template <typename TFormat, typename TFile, typename TSpec>
302 template <typename TValue, typename TFormat, typename TFile, typename FileReaderTSpec, typename TFi…
304 _findHorspool(Finder<String<TValue, FileReader<TFormat, TFile, FileReaderTSpec> >, TFinderSpec > & … in _findHorspool() argument
309 …typedef Finder<String<TValue, FileReader<TFormat, TFile, FileReaderTSpec> >, TFinderSpec > TFinder; in _findHorspool()
/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/graph_align/
H A Dgraph_impl_align.h711 template <typename TFile, typename TStringSet, typename TCargo, typename TSpec>
713 write(TFile & target,
835 template <typename TFile, typename TSpec, typename TNames>
837 write(TFile & file,
847 typename DirectionIterator<TFile, Output>::Type target = directionIterator(file, Output());
874 template <typename TFile, typename TSpec, typename TNames>
876 write(TFile & file,
939 template <typename TFile, typename TStringSet, typename TSpec, typename TEdge>
941 _writeCargo(TFile & file,
951 _writeCargo(TFile & file,
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/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/graph_msa/
H A Dgraph_align_tcoffee_io.h119 read(TFile & file, in read()
260 read(TFile & file, in read()
304 void write(TFile & file, in write()
389 read(TFile & file, in read()
506 read(TFile & file, in read()
515 typedef typename Value<TFile>::Type TValue; in read()
613 read(TFile & file, in read()
706 void write(TFile & file, in write()
768 void write(TFile & file, in write()
829 read(TFile & file, in read()
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/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/graph_types/
H A Dgraph_drawing.h323 _writeGraphFooter(TFile &, in _writeGraphFooter() argument
335 _writeGraphFooter(TFile &, in _writeGraphFooter() argument
347 _writeGraphFooter(TFile &, in _writeGraphFooter() argument
360 _writeGraphFooter(TFile &, in _writeGraphFooter() argument
372 _writeGraphType(TFile & file, in _writeGraphType()
420 _writeEdgeType(TFile & file, in _writeEdgeType()
432 _writeEdgeType(TFile & file, in _writeEdgeType()
444 _writeEdgeType(TFile & file, in _writeEdgeType()
456 _writeEdgeType(TFile & file, in _writeEdgeType()
546 TFile & file, in writeRecords()
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H A Dgraph_impl_automaton.h630 template<typename TFile, typename TAlphabet, typename TCargo, typename TSpec>
632 write(TFile & target, in write()
H A Dgraph_impl_directed.h651 template <typename TFile, typename TCargo, typename TSpec>
653 write(TFile & target, in write()

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