Searched refs:alignmap (Results 1 – 1 of 1) sorted by relevance
6640 CAlignMap alignmap(align.GetAlignMap()); in transform_align() local6641 TSignedSeqPos left = alignmap.MapEditedToOrig(cds_on_mrna.GetFrom()); in transform_align()6642 TSignedSeqPos right = alignmap.MapEditedToOrig(cds_on_mrna.GetTo()); in transform_align()6758 CAlignMap alignmap(align.GetAlignMap()); in transform_align() local6761 TrimProtein(align, alignmap); in transform_align()6763 TrimTranscript(align, alignmap); in transform_align()6771 void TrimProtein(CAlignModel& align, CAlignMap& alignmap) in TrimProtein()6803 void TrimTranscript(CAlignModel& align, CAlignMap& alignmap) in TrimTranscript()8274 CAlignMap alignmap(a.GetAlignMap()); in transform_align() local8275 …if(a.Exons().size() == 1 && min(a.Limits().GetLength(),alignmap.FShiftedLen(alignmap.ShrinkToRealP… in transform_align()[all …]